Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o13r
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    28   0.99 
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    28   1.3  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   1.7  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    27   2.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   3.0  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   7.0  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   9.2  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
            homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 569  TAVLTGQSQVATPVIIPAMEVSL--WTLTEISAALESPVTNPV 447
            ++ L  Q+ V +   +P +E +   W   + S+ LESPV NPV
Sbjct: 901  SSFLAPQTPVKSKHALPLVEANAPPWEPIDFSSLLESPVPNPV 943


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 468 LKSSRDLGQGPEGDFHSRDNHWSGNLALSSQDGG 569
           L S++   Q P GD++S D   S     SSQ  G
Sbjct: 217 LNSNKKQSQSPNGDYNSSDESCSNKTVASSQRRG 250


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 408 HDHVEGILQVRNQNRVSYRALKSSRDLGQGPEGDFHSRDNHWSGNLALSSQDG 566
           H+  +  L+ RN   +S     SS  L         S   H SGNLAL S  G
Sbjct: 203 HEMAQESLETRNPGNIS----SSSAPLASDQSPTVSSNHIHASGNLALGSNSG 251


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 87  DHRSHRGWAFNNNDRFGSD 143
           +H+ H GW F NN+ F  +
Sbjct: 98  NHKYHYGWVFLNNEEFSDE 116


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 455 NPVLVPYLENALNVIMDAMFA 393
           N  ++PYL+N L VI D + A
Sbjct: 326 NEAMIPYLQNILKVIRDTLTA 346


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/62 (20%), Positives = 30/62 (48%)
 Frame = -2

Query: 584 LNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMD 405
           LNE ++      S+    +  P+M  +++   E    + +P+  P+L+P L + +  + D
Sbjct: 478 LNEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPILIPLLISFIKEVKD 537

Query: 404 AM 399
            +
Sbjct: 538 ML 539


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 558 DWTKPGCHSSDYPCYGSLPLDPD 490
           DW K G +SS++   GSL  +P+
Sbjct: 57  DWLKQGKYSSEWIAMGSLNEEPN 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,196
Number of Sequences: 5004
Number of extensions: 32802
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)