Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o13r
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_45059| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                27   9.7  

>SB_21668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 623 KTEPAMIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISA 477
           +T+PA    +G ALN  ++++ T  ++   P   P++E+ L   T  +A
Sbjct: 45  ETDPASFLLVGNALNSRISSLCTQLNETGIPSEPPSVELDLTLDTSATA 93


>SB_45059| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 519

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  DDHRSHRGWAFNNNDRF 134
           D H S R W +N+ND+F
Sbjct: 367 DSHESARFWGYNDNDQF 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,757
Number of Sequences: 59808
Number of extensions: 288831
Number of successful extensions: 823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)