Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10o13r
(639 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 25 0.82
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 24 1.4
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 24 1.4
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 23 3.3
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 23 3.3
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 3.3
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 22 4.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 4.4
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 21 7.6
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 21 7.6
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 21 7.6
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 21 7.6
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 7.6
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 24.6 bits (51), Expect = 0.82
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 114 FNNNDRFGSDNGLFNNNDWFGLD 182
FNN ++ G DN + +ND+ D
Sbjct: 103 FNNKNKDGDDNNDYEDNDYGNQD 125
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.8 bits (49), Expect = 1.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 523 IITGVATWLCPVRTAVTTSLSAWPR 597
I+ G+ + C V +T ++ WPR
Sbjct: 385 ILIGLDSQFCTVEGFITAAVDEWPR 409
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.8 bits (49), Expect = 1.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 523 IITGVATWLCPVRTAVTTSLSAWPR 597
I+ G+ + C V +T ++ WPR
Sbjct: 438 ILIGLDSQFCTVEGFITAAVDEWPR 462
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 117 NNNDRFGSDNGLFNNNDW 170
NNN ++ +N +NNN++
Sbjct: 91 NNNYKYNYNNNNYNNNNY 108
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 3.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 117 NNNDRFGSDNGLFNNNDW 170
NNN ++ +N +NNN++
Sbjct: 91 NNNYKYNYNNNNYNNNNY 108
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.6 bits (46), Expect = 3.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 117 NNNDRFGSDNGLFNNNDW 170
NNN ++ +N +NNN++
Sbjct: 326 NNNYKYNYNNNNYNNNNY 343
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.2 bits (45), Expect = 4.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1
Query: 546 PGCHSSDYPCYGSLPLDPD 490
P H + C S+PL+PD
Sbjct: 104 PEVHQAINTCQPSIPLEPD 122
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 22.2 bits (45), Expect = 4.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 98 TPVIVANPEIEVNPIDI 48
T +V NPEIE+ +DI
Sbjct: 167 TDPLVVNPEIELPQLDI 183
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.4 bits (43), Expect = 7.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 117 NNNDRFGSDNGLFNNN 164
NNN ++ +N +NNN
Sbjct: 93 NNNYKYNYNNNNYNNN 108
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 7.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 117 NNNDRFGSDNGLFNNN 164
NNN ++ +N +NNN
Sbjct: 93 NNNYKYNYNNNNYNNN 108
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 7.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 117 NNNDRFGSDNGLFNNN 164
NNN ++ +N +NNN
Sbjct: 93 NNNYKYNYNNNNYNNN 108
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 7.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 117 NNNDRFGSDNGLFNNN 164
NNN ++ +N +NNN
Sbjct: 93 NNNYKYNYNNNNYNNN 108
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.4 bits (43), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 446 LVPYLENALNVIMDAMFAGHEVTS 375
LVPYLEN N + + AG + S
Sbjct: 471 LVPYLENKGNGVYAWIGAGRDSDS 494
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,995
Number of Sequences: 438
Number of extensions: 2340
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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