Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o13f
         (619 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.7  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    22   4.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   6.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.3  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 367 QVATPVIIPAMEVSLWTLTEISAALESPVTN 459
           Q ATP   P    S W+  +    + SP  N
Sbjct: 292 QQATPYSAPGPTYSTWSTVQTPTTVMSPTIN 322


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 253 TIPDLSNALQDPKTEPA 303
           T  DL ++ Q P+T+PA
Sbjct: 72  TSQDLQHSYQSPQTQPA 88



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 61  SVAFGYQTTWTVHELSNAIQSPYT 132
           ++AFG    +T+H   +   +P+T
Sbjct: 477 NIAFGDAVLYTIHMGYHGFHNPFT 500


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 516 RRTRSDFNLCFHP 554
           R  R ++N+CF P
Sbjct: 395 RNNRDEYNVCFRP 407


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
 Frame = +3

Query: 324  GAQRGRHRRPDW-TKP 368
            GA    H  PDW TKP
Sbjct: 1024 GASSTEHMHPDWTTKP 1039


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 222 NGYSFNLFSCVKSSHHLVES 163
           NGY     + + S+HHL +S
Sbjct: 63  NGYGLPGHTIIASNHHLAKS 82


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +3

Query: 492 QRDHGRHVRRTRSDFNLCFHPCW 560
           + +  RH+   R+   L FH  W
Sbjct: 398 RHNFNRHLNSNRAPLGLHFHASW 420


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +3

Query: 492 QRDHGRHVRRTRSDFNLCFHPCW 560
           + +  RH+   R+   L FH  W
Sbjct: 405 RHNFNRHLNSNRAPLGLHFHASW 427


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = +3

Query: 507 RHVRRTRSDFNLCFHPCW 560
           RH    R+   L FH  W
Sbjct: 411 RHYEENRAPLGLYFHAAW 428


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.129    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,076
Number of Sequences: 336
Number of extensions: 3195
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)