Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10o13f
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 31 0.13
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 28 1.2
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 1.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.2
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.9
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 2.9
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 25 6.6
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 25 8.8
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 25 8.8
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 31.1 bits (67), Expect = 0.13
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +1
Query: 199 EKIEAVPVTIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVAT 378
E A T ++T++ +P + L + + ++ P+ L + ++ L Q+ V +
Sbjct: 857 ETSSAFAKTYAEKEVTSINLPSVRKPLDESYYDHSISPF--DPLCQ--SSFLAPQTPVKS 912
Query: 379 PVIIPAMEVSL--WTLTEISAALESPVTNPV 465
+P +E + W + S+ LESPV NPV
Sbjct: 913 KHALPLVEANAPPWEPIDFSSLLESPVPNPV 943
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 444 LKSSRDLGQGPEGDFHSRDNHWSGNLALSSQDGG 343
L S++ Q P GD++S D S SSQ G
Sbjct: 217 LNSNKKQSQSPNGDYNSSDESCSNKTVASSQRRG 250
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -2
Query: 504 HDHVEGILQVRNQNRVSYRALKSSRDLGQGPEGDFHSRDNHWSGNLALSSQDG 346
H+ + L+ RN +S SS L S H SGNLAL S G
Sbjct: 203 HEMAQESLETRNPGNIS----SSSAPLASDQSPTVSSNHIHASGNLALGSNSG 251
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.6
Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 2/144 (1%)
Frame = +1
Query: 130 TSAAVLPYLETALNQMMAALHAGEKIEAVPVT--IPALDLTAMTIPDLSNALQDPKTEPA 303
T+++ LP T+ + G + P+T +P ++ +IP + T +
Sbjct: 217 TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 276
Query: 304 MIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISAALESPVTNPVLVPYLE 483
+P + + TG S +P S + A+ S T+ +P
Sbjct: 277 PLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTS 336
Query: 484 NALNVIMDAMFAGHEVTSICVSIP 555
+ G+ T + ++P
Sbjct: 337 TSCTTSTSIPPTGNSTTPVTPTVP 360
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 2/113 (1%)
Frame = +1
Query: 223 TIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPV--IIPA 396
T+P ++ +IP + T + +P + + G S ++TP+ +P
Sbjct: 194 TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPP 253
Query: 397 MEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMDAMFAGHEVTSICVSIP 555
S ++ + S TN +P + G+ T + ++P
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 94 VHELSNAIQSPYTSAAVLPYLETALNQMMAALHAGEKIEAVPVTIPA 234
V+EL+ P ++A+ P ++ +NQ+M+ A AVP IPA
Sbjct: 854 VNELNGVSTKP--ASAITPETKSTVNQIMSGGEALAAPVAVPAPIPA 898
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 2.9
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 208 EAVPVTIPALDLTAMTIP-DLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPV 384
E +TIP ++T MTIP + + P E I + + E +T + T + T
Sbjct: 22 EITTMTIPMEEITTMTIPMEEITTMTIPMEE---ITTMTTPMEE-ITTITTPMEETTT-- 75
Query: 385 IIPAMEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMD 507
I P +E + T+ + AA+ +P+ +P +E +++
Sbjct: 76 ITPMVETT--TILPM-AAMTTPMVETTTIPTVETTTTPMVE 113
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 457 NPVLVPYLENALNVIMDAMFA 519
N ++PYL+N L VI D + A
Sbjct: 326 NEAMIPYLQNILKVIRDTLTA 346
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/62 (20%), Positives = 30/62 (48%)
Frame = +1
Query: 328 LNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISAALESPVTNPVLVPYLENALNVIMD 507
LNE ++ S+ + P+M +++ E + +P+ P+L+P L + + + D
Sbjct: 478 LNEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPILIPLLISFIKEVKD 537
Query: 508 AM 513
+
Sbjct: 538 ML 539
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 216 YSFNLFSCVKSSHHLVESRLKVGQDRSRSVRALDGIGELMHGP 88
+SFNL S HLVES+ Q R+++A++ + P
Sbjct: 3 WSFNLSSNAALVQHLVESKFLTNQ---RAIKAMNATSRSFYCP 42
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 354 DWTKPGCHSSDYPCYGSLPLDPD 422
DW K G +SS++ GSL +P+
Sbjct: 57 DWLKQGKYSSEWIAMGSLNEEPN 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.129 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,199
Number of Sequences: 5004
Number of extensions: 51900
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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