Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10o13f
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 30 1.3
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 30 1.7
07_03_0307 - 16546692-16546791,16548107-16548336 30 1.7
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 30 1.7
04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455 29 3.0
01_01_0212 - 1814769-1814813,1814856-1814923,1816119-1816203,181... 29 3.0
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454... 29 3.9
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.9
08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713... 28 5.2
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 28 5.2
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 28 5.2
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 27 9.0
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 27 9.0
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1
Query: 217 PVTIPALDLTAMTIPDLSNALQDPKT--EPAMIPYLGQALNEVVTAVLTGQSQVATPVII 390
P+ IP + P L+N T EP + GQ L + + VL+ + +I
Sbjct: 372 PMNIPVPTYLPSSQPPLANIAASAATVAEPVTLVTPGQLLPTISSTVLSADALETASAMI 431
Query: 391 PAMEV--SLWTLTEISAALESPVTNPVLVP 474
P+ + S+ + ++ + A S VT+ V+ P
Sbjct: 432 PSPKAASSMVSSSQAALAASSQVTSSVVSP 461
>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Frame = +1
Query: 154 LETALNQMMAALHAGEKIEAVPVTIPALDLTAMTI--PDLSNALQDPK--TEPAMIPYLG 321
L+ AL++M +I+ +P L+++T P LS+A P + A P+
Sbjct: 1914 LQCALDRMELPATIRRRIQVAMPILPTSRLSSITCGPPLLSSAALSPFQCSTSAAGPHQQ 1973
Query: 322 QALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTE 426
LN + T L+ + + A P P ME+ WTL E
Sbjct: 1974 FPLNWIPTN-LSRRCKAALPSQDPNMEIDPWTLLE 2007
>07_03_0307 - 16546692-16546791,16548107-16548336
Length = 109
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -3
Query: 302 AGSVLGSCRALDRSGMVIAVRSKAGM 225
A S G RAL R G+V+AVR++AG+
Sbjct: 20 APSAPGRARALARRGLVVAVRAEAGV 45
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 444 LKSSRDLGQGPEGDFHSRDNHWSGN 370
L+SS LG+ P+G F + D+ W+ N
Sbjct: 255 LRSSSGLGRNPDGTFVAEDDWWAAN 279
>04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455
Length = 300
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Frame = -2
Query: 486 ILQVRNQNR--VSYRALKSSRDLGQG---PEGDFHSRDNHWSGNLALSSQDGGDDLVERL 322
I+ +RN N+ S ++ S LG G P H GN + +D+VE+L
Sbjct: 126 IISLRNTNKGLTSLQSSSSPTKLGDGLPLPPSRIHRSKTTVFGN------NDSEDIVEKL 179
Query: 321 AKVRNHSGFSFRVLQSIRQVGNGHC 247
+ SG R L S +Q HC
Sbjct: 180 RPSQRSSGDDHRGLGSAKQAEAPHC 204
>01_01_0212 -
1814769-1814813,1814856-1814923,1816119-1816203,
1816306-1816554
Length = 148
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 53 LSCRWPSATRLPGPCMSSPMPSRARTLLLRSCPTLRR 163
L+ P++ RL SSP P R R LLL + LRR
Sbjct: 3 LAVATPASARLSPLTTSSPEPCRRRRLLLSAAAPLRR 39
>12_02_0869 -
23844378-23844689,23844924-23845233,23845322-23845447,
23845522-23845727,23845832-23845964,23846045-23846208,
23846856-23846948,23847074-23847196,23847318-23847384,
23847473-23847564,23847667-23847779,23847796-23847845,
23848098-23848189
Length = 626
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Frame = -2
Query: 369 LALSSQDGGDDLVERLAKVRNHSGFSFRVLQSIRQ-----VGNGH 250
+AL+ +DL+ RLA+ ++H+ F + +S+++ VG GH
Sbjct: 1 MALTQSMDVNDLISRLAEFQSHTNFDSNLKRSLKEEYDQAVGGGH 45
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 244 TAMTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPV 384
TA+T+ S + P TEPA++P AL TA L + V +PV
Sbjct: 1365 TAVTVGTPSPSAPTPATEPALVPASASAL---ATAPLMQPNVVISPV 1408
>08_02_1144 +
24670224-24670607,24670723-24670928,24671211-24671310,
24671539-24672864
Length = 671
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3
Query: 300 RYDSLPWPGAQRG 338
R+ SLPWPG++RG
Sbjct: 38 RFSSLPWPGSKRG 50
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = +1
Query: 250 MTIPDLSNALQDPKTEPAMIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEI 429
M PDL N L+ + +P L +ALN+V + + + + A + L T
Sbjct: 155 MLDPDLFNVLRFTISAIPFVPLLLKALNDVQVFIRGVELGIWVAIGYLAQAIGLVTADAG 214
Query: 430 SAALESPVTNPVLVPYLENALNVIMDA 510
A S +T ++VP+L+ L + A
Sbjct: 215 RTAFISSLT-VIIVPFLDGILGAEIPA 240
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 239 SKAGMVTGTASIFSPA*RAAIIWLRAVS-R*GRTAAEVYGLWMALESS 99
S A V S A R +I L AVS R R VYG WM E++
Sbjct: 191 SHAARVAAAIDALSAAARDEVIDLVAVSSRLARRVCRVYGFWMGPEAA 238
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +1
Query: 73 GYQTTWTVHELSNAIQSPYT------SAAVLPYLETALNQMMAALHAGEKIEAVPVTIPA 234
G+ + + VH+L ++ + S A +E + Q +ALH +K +A V
Sbjct: 653 GWSSGFQVHQLGKVLRKAWAEENGCPSEACKDEIEDSCCQSDSALH--DKDQAAHVVSHE 710
Query: 235 LDLTAMTIPDLS 270
LDL ++PDL+
Sbjct: 711 LDLNESSVPDLN 722
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -2
Query: 387 NHWSGNLALSSQDGGDDLVERLAKVRNHSGFSFRVLQSIRQVGNGHCGE 241
N W G + ++ DD++ + N + + Q I+ +GH GE
Sbjct: 485 NIWRGIQEIMDEEVDDDVIVKAVDCSNQAEVDIELKQFIKGYSDGHKGE 533
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.129 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,813
Number of Sequences: 37544
Number of extensions: 416695
Number of successful extensions: 1355
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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