Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o13f
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         38   0.009
SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)                    31   0.99 
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_21668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  

>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
 Frame = +1

Query: 145 LPYLETALNQMMAALHAGEKIEAVPVTIPALDLTAMTIPDLSNALQDPKTEPAMIPYLGQ 324
           +P +  A+ +++ A+   E + AVP  +PA+      +P++  A+  P+  PA +P +  
Sbjct: 41  VPEIVPAVPEVVPAVP--EIVPAVPEVVPAVPEVVPVVPEVEPAV--PEVVPA-VPEIVP 95

Query: 325 ALNEVVTA---VLTGQSQV--ATPVIIPAMEVSLWTLTEISAALESPV-TNPVLVPYLEN 486
           A+ EVV A   V+    +V  A P I+PA+   +  + EI  A+   V   P +VP +  
Sbjct: 96  AVPEVVPAVPEVVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPAVPEIVPAVPE 155

Query: 487 ALNVIMDAMFAGHEVTSI 540
            +  + + + A  EV ++
Sbjct: 156 IVPAVPEVVPAVPEVVAV 173


>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
          Length = 940

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 23/107 (21%), Positives = 43/107 (40%)
 Frame = -2

Query: 372 NLALSSQDGGDDLVERLAKVRNHSGFSFRVLQSIRQVGNGHCGEVQSGNGNGYSFNLFSC 193
           NL       G+  +  L  +R+ +      L       +G   +   GN N Y+F+ FSC
Sbjct: 208 NLEKRVSSSGETKLSDLGSIRSDANLHSMDLAIQSNTVDGLSAQASGGNQNSYAFSCFSC 267

Query: 192 VKSSHHLVESRLKVGQDRSRSVRALDGIGELMHGPGSLVAEGHRQDS 52
            +   + + S L V  + + +      +  L   P + + +GH+  S
Sbjct: 268 -EIPQNSLRSELPV--NTTLTTHHPSSLHRLESPPHTYMVKGHQASS 311


>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 70  FGYQTTWTVHELSNAIQSPYTSAAVLPYLETALNQMMAALHAGEKIEAV-PVTIPALDLT 246
           FG   T  +H  S+A  + Y   + L  ++      ++   A  ++  + P+TIP L+LT
Sbjct: 174 FGGIKTVELHNFSDASTNGYGQCSYLRLIDNEDRIHVSLAMAKSRVTPLKPITIPRLELT 233

Query: 247 AMTIP-DLSNALQDPKTEPAM 306
           A  +  ++S  LQ     P M
Sbjct: 234 AALVSGNVSAFLQKELGYPGM 254


>SB_21668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 289 KTEPAMIPYLGQALNEVVTAVLTGQSQVATPVIIPAMEVSLWTLTEISA 435
           +T+PA    +G ALN  ++++ T  ++   P   P++E+ L   T  +A
Sbjct: 45  ETDPASFLLVGNALNSRISSLCTQLNETGIPSEPPSVELDLTLDTSATA 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.129    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,522,527
Number of Sequences: 59808
Number of extensions: 446005
Number of successful extensions: 1256
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)