Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o09r
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.9  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   7.8  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 190 YWNVQKTGYYFDTEGG 143
           +W+V  TG + D  GG
Sbjct: 189 WWDVHSTGSWLDMSGG 204


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -2

Query: 278 YYSTHNLSLRNAEWEAKT--LCNMHWN 204
           YY   N+  +NAE+  K     N H+N
Sbjct: 418 YYQNENMLQKNAEYSGKVGYYENNHYN 444


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -2

Query: 278 YYSTHNLSLRNAEWEAKT--LCNMHWN 204
           YY   N+  +NAE+  K     N H+N
Sbjct: 366 YYQNENMLQKNAEYSGKVGYYENNHYN 392


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 409 IPRWHIDDTVHVYVT 365
           +PRW+I  T+ V +T
Sbjct: 37  VPRWYICYTIGVIIT 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,281
Number of Sequences: 336
Number of extensions: 3906
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)