Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10o09r
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132... 100 1e-21
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 36 0.033
03_05_1105 + 30438140-30438350,30438448-30438926 33 0.18
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 31 0.94
03_01_0560 + 4162206-4162607 30 1.6
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 29 3.8
05_07_0084 - 27587307-27589175 29 5.0
05_04_0296 - 19943253-19944159,19944239-19945031,19945434-199454... 28 8.8
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906... 28 8.8
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 28 8.8
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 28 8.8
>02_01_0195 +
1327071-1327187,1328060-1328203,1328340-1328431,
1329393-1329579,1329676-1329831,1329959-1330012
Length = 249
Score = 100 bits (239), Expect = 1e-21
Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 1/193 (0%)
Frame = -1
Query: 732 TLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGL 553
TL + +++ G Y+ + G L+ + G + L + P + R G LL L
Sbjct: 43 TLCVALAASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVPVFEERK--RFGILLAAAL 99
Query: 552 TSGMSMGPLLEYVSVVDPSIIITALLGITLVFVCFSAAAMLAERGSWXXXXXXXXXXXTS 373
G S+GPL++ D SI++TA +G + F CF+ AA++A+R + +
Sbjct: 100 LEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRREYLYLGGLLSSGLSI 159
Query: 372 MS-LMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFI 196
+ L ++F S + +Y GL++ G++++DTQ IIE+ G D+++HAL LF
Sbjct: 160 LLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFT 219
Query: 195 DFIGMFRRLVIIL 157
DF+ + R+++I+
Sbjct: 220 DFVAVLVRILVIM 232
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 35.9 bits (79), Expect = 0.033
Identities = 14/57 (24%), Positives = 35/57 (61%)
Frame = -1
Query: 306 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIILTQKEEQN 136
LG ++ GF+++DT+ +I +R D++ ++EL++D + +F ++ ++ + N
Sbjct: 212 LGALVFSGFIIYDTENLI--KRHTYDDYIWASVELYLDILNLFLYILNMIRSMQSDN 266
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = -1
Query: 306 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVII 160
L ++ CG++++DT +I +R ++V A+ L++D I +F L+ +
Sbjct: 177 LAALVFCGYIVYDTDNLI--KRYSYDEYVWAAVALYLDVINLFLSLLTL 223
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 31.1 bits (67), Expect = 0.94
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = -1
Query: 666 AGFLSAIVGAGLMLMLIATPD-NGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSII 490
AG LS++ AG L + ++ T+ +G ++GFG+ G ++ V S +
Sbjct: 222 AGLLSSLAAAGTWLQVASSYGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWV 281
Query: 489 ITALLGITLVFVCF 448
I+ L+G + F+ +
Sbjct: 282 ISPLMGAAVSFIVY 295
>03_01_0560 + 4162206-4162607
Length = 133
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 681 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 532
F F G A+ A L L+L+A D + G+L G LT S+G
Sbjct: 58 FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +2
Query: 422 RSASIAAAEKHTNTRVMPSRAVIMID------GSTTLTYSSRGPMLMPDVNPNPSR*PSR 583
R++++ ++EK + +P +++ G T + SS GP D+N P+R P +
Sbjct: 37 RTSAVVSSEKESANSFVPHNGTGLVERISNDAGLTEVVGSSAGPTECIDLNKTPARKPKK 96
Query: 584 K 586
K
Sbjct: 97 K 97
>05_07_0084 - 27587307-27589175
Length = 622
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 401 PRNSQL-PRSASIAAAEKHTNTRVMPSRAVIMIDGSTTLTYSSRG 532
P S+ P +AS A H+ + V+P V++ G+T Y+ G
Sbjct: 446 PEGSRFRPLAASTVARMYHSTSAVLPDATVLVAGGNTNAAYNFSG 490
>05_04_0296 -
19943253-19944159,19944239-19945031,19945434-19945496,
19947086-19947182
Length = 619
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 389 INVPPRNSQLPRSASIAAAEKHTNTRVMPSRAVIMIDGSTTLTYSSRGPMLMPD 550
+ +PP S L R A +AAA VMP + + D S+ G +L D
Sbjct: 262 VKMPPAGSPLVRLAQVAAAAFKKRKAVMPEPSRLYEDKVLDAGISTTGRLLHTD 315
>02_04_0585 -
24088344-24089366,24089833-24090075,24090305-24090655,
24090736-24090823,24091178-24091275,24091813-24092025,
24092150-24092245,24093124-24093195,24093909-24094067
Length = 780
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 431 SIAAAEKHTNTRVMPSRAVIMIDGSTTLTYSSRGPMLMP-DVNPNPSR*PSRKLVFFP 601
S+A N+R++P + +I G T+ S GP+ V P+ + P + L+ P
Sbjct: 536 SLANKPSPNNSRLLPQGSAALISGKTSALVGSGGPLSHGLVVTPSQTTGPPKSLIPAP 593
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 353 TKVISDIDVNSVINVPPRNSQLPRSASIAAAEKHTNTRVMPSRAVIMIDGSTTLTYSSRG 532
T V SD N V +V LP +AEK + + P+ +MID ++ LTY +G
Sbjct: 37 TVVTSDYGGNFVKDVCIDEGVLPHRK--ISAEKKLDEKSPPNFDFLMIDTNSDLTYGGKG 94
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 460 YQGNAEQSSYYDRWVNYTDIFKQGTHAHA*C 552
Y +A Q++Y D+W++Y + G+ A C
Sbjct: 69 YGQDAIQAAYVDQWLDYAPVILSGSEFEAAC 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,188,647
Number of Sequences: 37544
Number of extensions: 407078
Number of successful extensions: 867
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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