Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o09r
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)               35   0.078
SB_12968| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_13281| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_47389| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   5.1  
SB_33588| Best HMM Match : VRP3 (HMM E-Value=6.4)                      28   9.0  
SB_25768| Best HMM Match : tRNA_int_endo_N (HMM E-Value=9.2)           28   9.0  

>SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)
          Length = 344

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 11/144 (7%)
 Frame = -1

Query: 537 MGPLLEYVSVVDPSIIITALLGITLVFVCFSAAAMLAERGSWXXXXXXXXXXXTSMSLMT 358
           +G +L  + ++   +++ A +    V    S  A  A  G +             + + +
Sbjct: 199 VGTILAPIMLLGGPLVVRAAVVTAGVVGALSLTAACAPDGKFLTWGGPLAIGLGGVVMAS 258

Query: 357 LVNLFMQSHFLYQAHL-----YLGLMLMCGFVLFDTQLIIEKRR----MGSK--DFVQHA 211
           L +LF+ +     A L     Y GL++  GF+L+DTQ II +        S+  D +  +
Sbjct: 259 LGSLFLPATTAVGAGLQAITTYGGLVIFGGFLLYDTQKIIRQAETHPLYASRPYDPINAS 318

Query: 210 LELFIDFIGMFRRLVIILTQKEEQ 139
           + +++D I +F R+V I+  +  +
Sbjct: 319 IGIYMDTINIFIRIVTIMASQNNR 342


>SB_12968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 501 PSIIITALLGITLVFVCFSAAAMLAERGS 415
           P I++TA     ++F CF+ +A+ AE+ S
Sbjct: 70  PLIVVTAFFATVMIFACFTVSALWAEQRS 98


>SB_13281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 370 HRREQCHQCATEE*PAASFSKHSSSREAYKYQGNAEQSSYYDRWVNYTDIFK 525
           HR  QC++C      ++S +KH   RE    Q    Q S++ R+VN T+ +K
Sbjct: 362 HRPHQCNECGKRFSQSSSLNKHLRWRET--VQVPLLQQSFH-RFVNSTNPYK 410


>SB_47389| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 341

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -1

Query: 525 LEYVSVVDPSIIITALLGITLVFVCFSAAAMLA 427
           L+Y +++ P +++T++  + +  + F+  AMLA
Sbjct: 140 LQYPNIMTPKVVLTSIFSLWVYAILFTVIAMLA 172


>SB_33588| Best HMM Match : VRP3 (HMM E-Value=6.4)
          Length = 372

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = -1

Query: 198 IDFIGMFRRLVIILTQKE-------EQNXXXXXXXKYT*KVLFTHISMVIRMFEDICFFF 40
           + F  M R   IIL +K        EQN       K+T  V+ TH+S+    F  ICF  
Sbjct: 6   VSFTVMLRCTTIILNKKTQHQQFDYEQNERGLRNVKFTLVVISTHVSINFNAFNIICFAI 65

Query: 39  YFL 31
           + L
Sbjct: 66  HDL 68


>SB_25768| Best HMM Match : tRNA_int_endo_N (HMM E-Value=9.2)
          Length = 247

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -1

Query: 360 TLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGS 232
           T+  L + +H +Y     +  + +   +++DT++II + R+GS
Sbjct: 34  TMTQLRIGAHVVYDTEATITRIRLGAHIVYDTEVIITRIRLGS 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,548,313
Number of Sequences: 59808
Number of extensions: 486951
Number of successful extensions: 1109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)