Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o09r
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical ...    40   0.002
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    38   0.007
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    29   4.5  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    29   4.5  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain (...    28   7.8  
AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain (...    28   7.8  
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    28   7.8  

>AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.2 protein.
          Length = 133

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = -1

Query: 348 LFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR--MGSKDFVQHALELFIDFIGMFR 175
           +F+   FLY  +  LG +L   ++  D QLI+  RR  +  ++++  A  +F+D +GMF 
Sbjct: 65  IFLNWQFLYIVYAVLGALLCMFYLAIDIQLIMGGRRVEISPEEYIFAATHVFVDILGMFL 124

Query: 174 RLV 166
            ++
Sbjct: 125 NIL 127


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = -1

Query: 375 SMSLMTLV-NLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR--MGSKDFVQHALE 205
           S  +  L+  L     FLY  +  L  +LM  ++  D QL++  R+  +  +D++  A+E
Sbjct: 165 SFGIFALIFTLAFNWQFLYSVYSGLAALLMMFYLAIDVQLLMGGRKYELSPEDYIFAAME 224

Query: 204 LFIDFIGMFRRLVII 160
           +F+D + +F  L+ I
Sbjct: 225 IFLDILNIFLMLLNI 239


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 395 VPPRNSQLPRSAS-IAAAEKHTNTRVMPSRAV 487
           +PPR+   PRS S +A + K + T V P R+V
Sbjct: 103 IPPRSMIFPRSTSMVAESRKESTTAVAPKRSV 134


>Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical
           protein W09D10.1 protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +2

Query: 410 SQLPRSASIAAAEKHTNTRVMPSRAVIMIDGSTTLTYSSRGPMLMPDVNPNPSR*PSRKL 589
           SQLP+S S A  +  T    + SR     +G +T + ++  P L+   +P  S  P++K 
Sbjct: 140 SQLPKSLSQAQKKVGTPVVNIASRGSSSSNGHSTASAAAAAPSLLDFSDPPASTTPAKKA 199

Query: 590 V 592
           V
Sbjct: 200 V 200


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
 Frame = +2

Query: 392 NVPPRNSQLPRSASIAAAEKHTNTRVMP-----SRAVIMIDGSTTLTYSSRGPMLMP-DV 553
           N P  + Q+ + A     E  T TRV P     +   I    ST  +YSS  P   P   
Sbjct: 407 NAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTIKFPISTGTSYSSTTPPTTPKPA 466

Query: 554 NPNPSR*PS 580
            P PSR P+
Sbjct: 467 PPPPSRIPN 475


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 585 LRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGITLVF 457
           L +  LL F   SG+   P+LEY S+   +I++ AL  IT ++
Sbjct: 247 LGIAVLLYFSSQSGLLKSPILEY-SIFSVAILMPALSPITYLY 288


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 585 LRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGITLVF 457
           L +  LL F   SG+   P+LEY S+   SI++ AL  IT ++
Sbjct: 247 LGIAVLLYFASQSGLFTSPILEY-SIFAISILMPALSPITYLY 288


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
 Frame = +2

Query: 392 NVPPRNSQLPRSASIAAAEKHTNTRVMP-----SRAVIMIDGSTTLTYSSRGPMLMP-DV 553
           N P  + Q+ + A     E  T TRV P     +   I    ST  +YSS  P   P   
Sbjct: 414 NAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPA 473

Query: 554 NPNPSR*PS 580
            P PSR P+
Sbjct: 474 PPPPSRIPN 482


>AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform c protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 609 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 496
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform a protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 609 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 496
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 609 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 496
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 129 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,683,671
Number of Sequences: 27780
Number of extensions: 361668
Number of successful extensions: 905
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)