Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o09f
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-8|AAF99924.1|   78|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain (...    28   6.5  
AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain (...    28   6.5  
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    28   6.5  

>U70849-8|AAF99924.1|   78|Caenorhabditis elegans Hypothetical
           protein F29B9.10 protein.
          Length = 78

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 53  RLLNSHWSIKSLHTTQFYSLPYSLQRRT 136
           RL++S   +K +  TQFY  PY +QR+T
Sbjct: 16  RLMDSEGMLKIIRRTQFYQKPY-MQRKT 42


>AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform c protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 506 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 619
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform a protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 506 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 619
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 506 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 619
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 129 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,984,212
Number of Sequences: 27780
Number of extensions: 316595
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)