Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10o07r
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 78 2e-15
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 29 0.54
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 1.3
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 28 1.7
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 26 5.1
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 26 5.1
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 6.7
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 8.9
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.9
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 77.8 bits (183), Expect = 2e-15
Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Frame = -2
Query: 704 RPVVIIEAGIIPNEWITIPAVLNTVDRIL-----EGSA--YLDAFDWIVVPVVNPDGYEY 546
+ V+II+ G EWI IP+V ++L +G LD F+WI +PV+N DGYEY
Sbjct: 238 KKVIIIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEY 297
Query: 545 THTNLRLWSKSRSTRSNLGIICPGVNINRNFDLDWXXXXXXXXXXSHLYAGVEPFSEPET 366
T +N RLWSK+R +N C G+N++ N+ + S+ Y G+ PF ET
Sbjct: 298 TWSNDRLWSKNRQPLNNSE--CFGINLDANWAFGF---NGNIDPCSNEYGGLSPFQANET 352
Query: 365 KLLKHLIDE 339
L +LI E
Sbjct: 353 MALFNLITE 361
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 29.5 bits (63), Expect = 0.54
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 14 FLSKHHLQYFEFHLPVSKHR 73
+ +KHH+ Y+ +P SKHR
Sbjct: 107 YFTKHHINYYHIAMPGSKHR 126
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 556 PSGLTTGTTIQSNASK*ADPSNIL----STVFRTAGI 654
P GL+TG ++Q NAS DP L T+F+ I
Sbjct: 50 PFGLSTGLSVQLNASNMTDPFKFLLDNWHTIFKNGAI 86
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 520 RNLEAPEVTLASSALGSTSIAISTWTGHTSTLAPV 416
++L E T+ +S G+ +TW GH +LAPV
Sbjct: 26 QSLNELENTIRASKKGALIEFYATWCGHCKSLAPV 60
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -2
Query: 356 KHLIDEYGTRTRLYLSLQNNGGFLTYPWHFEKAASGMFRQHHLTGIDAVNAMNE----NY 189
K ID+ + L L +GGF YP H + + ++ L +D+++ +++ +Y
Sbjct: 49 KDQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASY 108
Query: 188 ILG 180
I+G
Sbjct: 109 IIG 111
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = -2
Query: 194 NYILGAASVVFGERASGTSVD----YV--RSNG-LLYTFNIDIVQRGNGVLIPAG 51
NYI ++FG +ASG +D Y+ R+NG + F + ++ G PAG
Sbjct: 318 NYIASGIGLIFGSQASGIFIDKTFRYLKRRNNGKMAPEFRVPVILLGT-FFFPAG 371
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 444 VQVEIAIDVDPRADDAKVTSGASRFRPE---SQIGMSIFISIRINNRYDNPIKCIQIGRP 614
++ +A+ + +DD +T + R S + F+S+ R P++CI I P
Sbjct: 370 IKFAVALGLHKNSDDPSLTQNSKELRNRLLWSVFCIDRFVSMTTGRRPSIPLECISIPYP 429
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 566 NPDGYEYTHTNLRLWSKSRSTRSNLGIICPGVN 468
NP+ + LR W K RS RS+ + G+N
Sbjct: 234 NPEIRMMLDSGLRDWRKQRSGRSSSHVASKGIN 266
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 12 NSSPNIIYNTSNFTCRYQNT 71
NSSPN+ N TC ++N+
Sbjct: 409 NSSPNVPINNFTSTCAFENS 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,522
Number of Sequences: 5004
Number of extensions: 74023
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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