Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o07r
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    42   4e-04
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129...    29   5.3  
01_06_1098 + 34518608-34519546                                         29   5.3  
03_04_0066 + 17003276-17004067                                         28   7.0  
03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911...    28   7.0  
05_07_0209 + 28420008-28421510                                         28   9.3  
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561...    28   9.3  

>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
 Frame = -2

Query: 476 GVNINRNFDLDWXXXXXXXXXXSHLYAGVEPFSEPETKLLKHLIDEYGTRTRLYLSLQNN 297
           GV++NRN+ +DW               G  PFSEPE ++++ L   +  +  +++++ + 
Sbjct: 159 GVDLNRNWSVDWGKKEKDYDPYEE-NPGTAPFSEPEAQIMRELSKSF--KPHMWVNVHSG 215

Query: 296 GGFLTYPW-HFEKAASGMFRQHHLTGIDAVN--AMNENYILGAASVVFGERASGTSVDYV 126
              L  P+ H     +G       T ++ +N     ++ ++G+     G  A GT+ DY+
Sbjct: 216 MEALFMPYDHKNTTPNGASAHLMRTVLENLNHRHFQDSCLVGSGGGAVGYLAHGTTTDYM 275


>07_01_0183 +
           1297445-1297796,1297896-1298424,1298548-1298630,
           1298901-1298989,1299091-1299164,1300196-1300246,
           1300439-1300515,1302199-1302863
          Length = 639

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 515 ISTRVSDWYEYIHIHQD*QQVRQSNQMHPNRQTLPIFYP 631
           +++   D + ++H HQ  QQ +Q  Q H  +Q   +F+P
Sbjct: 27  MASSTMDEHHHVHHHQQ-QQQQQQQQQHHQQQQHGLFFP 64


>01_06_1098 + 34518608-34519546
          Length = 312

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 387 FDSSIKVTAGT---GARVEV*PVQVEIAIDVDPRADDAKVTSGASRFR 521
           FD  +KV       G R    PV+V  A+ VD  A DAKV S + R +
Sbjct: 257 FDVDVKVPVRLQVGGVRTWAVPVRVRCAVVVDRLAADAKVVSKSCRVK 304


>03_04_0066 + 17003276-17004067
          Length = 263

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 219 RCCQCYERELYIRSGFCCVW 160
           RC +C E    +R G CC W
Sbjct: 181 RCGRCDEERWVVRCGACCAW 200


>03_02_0523 +
           9112577-9112608,9112626-9113251,9113696-9113747,
           9114713-9114782
          Length = 259

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 551 EYTHTNLRLWSKSRSTRSNLGIICPGVNINRNFDLD 444
           +Y   N   W +  S+R+   + C  + +NRN+D+D
Sbjct: 41  KYKFRNRLAWQEDESSRTE-SLGCNSIFVNRNYDMD 75


>05_07_0209 + 28420008-28421510
          Length = 500

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 308 LQNNGGFLTYPWHFEKAAS 252
           +Q NGGFLT  WH ++  S
Sbjct: 431 VQENGGFLTLTWHSQRLYS 449


>03_02_0099 -
           5614007-5614233,5614725-5614998,5615086-5616179,
           5616674-5616772,5617371-5617389
          Length = 570

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 4   IAEIPLQTSSTILRISPAGIKTPFPLCTISILKV*SKPLDLT--*STLVPEALSPNTTEA 177
           IA I LQ +   +R+ P G  TP  +C    L      +DL    +T++P  LS N    
Sbjct: 102 IARITLQQTPLSVRLHPGGPSTP-SICLACPLSSAPILVDLNTGSTTVLPAFLSDNGNLP 160

Query: 178 APN 186
           APN
Sbjct: 161 APN 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,204,266
Number of Sequences: 37544
Number of extensions: 453931
Number of successful extensions: 1187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)