Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o07r
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   1.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   1.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.1  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.5  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +3

Query: 33  YNTSNFTCRYQNTVSSLYN--INIESI 107
           YN +N+   Y N    LY   INIE I
Sbjct: 338 YNNNNYNNNYNNNCKKLYYNIINIEQI 364


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 18  SPNIIYNTSNFTCRYQNTVSSL-YNIN-IESI 107
           S   I+N +N+   Y N    L YNIN IE I
Sbjct: 86  SNKTIHNNNNYKYNYNNNCKKLYYNINYIEQI 117


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 654 SYPFIRDNTSFYYHHRSYGGGGPGYLQYTNGRFWS 758
           SY   +D + F    RSYG G    +Q  N   WS
Sbjct: 10  SYTNKKDESYFDEGGRSYGKGRGFIIQNNNNDDWS 44


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = +3

Query: 18  SPNIIYNTSNFTCRYQNTVSSLYN----INIESI 107
           S N  YN +N+   Y N    LY     INIE I
Sbjct: 319 SNNYNYNNNNYKYNYNNYNKKLYYKNYIINIEQI 352


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 342 RIWYQNSVVLISSEQRRVPNIS 277
           +IW+QN  + +  E R V  I+
Sbjct: 53  KIWFQNRRMKLKKELRAVKEIN 74


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 160 GKELQALV*IMLDLTVYFIL 101
           G+++   + I+L LTV+F+L
Sbjct: 269 GEKVSLSISILLSLTVFFLL 288


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 160 GKELQALV*IMLDLTVYFIL 101
           G+++   + I+L LTV+F+L
Sbjct: 265 GEKVSLSISILLSLTVFFLL 284


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = -2

Query: 155  RASGTSVDYVRSNGLLYTFNIDIVQRGNGVLIPAGEIRSIVDDVWRGI 12
            R S  S     +NG++  + + ++  G G+     +I S  + +  G+
Sbjct: 1099 RISWMSPPLSAANGVITGYKVIVIPSGGGIYTKDTKITSSSETILHGL 1146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,997
Number of Sequences: 438
Number of extensions: 5353
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)