Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10o07f
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 30 0.23
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 30 0.30
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 29 0.53
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 28 0.93
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ... 28 0.93
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 28 0.93
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 27 1.6
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 27 2.8
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 2.8
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 6.5
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.6
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 8.6
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 25 8.6
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 30.3 bits (65), Expect = 0.23
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 370 LFLNIGVGSFSFKNSNTSVTCKLLSIPNFSSCSSNHGK 257
LF N G K+ N+ ++ K LS NF S +S HG+
Sbjct: 108 LFTNANPGLSYTKDENSLLSSKFLSQSNFKSYNSTHGE 145
>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 198
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 363 RNNRNFDYTDFYRYNEILNHLNTLKESYANNPNINVDIIQHGVTDQNRPLVYLKISR-AT 539
++N D D+ Y E TLK+ NP + +I H + D P +Y ++R +
Sbjct: 111 KDNLGPDAKDYVLYTEYTGDSATLKQQLTVNPKADTSLIIHSLDD---PSLYAVVTRYSK 167
Query: 540 TAIRP 554
+ I P
Sbjct: 168 SGIEP 172
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 29.1 bits (62), Expect = 0.53
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 361 NIGVGSFSFKNSNTSVTCKLLSIPNFSSCSSN 266
++ + S + + SN+SV L S+PN+SS SN
Sbjct: 552 SVPISSLNGQRSNSSVQRALSSVPNYSSSLSN 583
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 28.3 bits (60), Expect = 0.93
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +3
Query: 276 QLEKLGIERSLHVTDVFEFLKEKDPTPMLRNNRNFDYTDFYRYNEILNHLNTLKESYANN 455
+L+KLGI+ +H F+++ P M+R +Y + N L L + +
Sbjct: 450 ELKKLGIDDLVH----FDYMDPPAPETMMRALEELNYLNCLDDNGDLTPLGRKASEFPLD 505
Query: 456 PNINVDIIQ 482
PN+ V +I+
Sbjct: 506 PNLAVMLIR 514
>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 28.3 bits (60), Expect = 0.93
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 411 ILNHLNTLKESYANNPNINVDIIQHGVTDQNRPLVYLKISRA 536
IL + L+ES+ NPN N+ +++ + +Q L + +S A
Sbjct: 4 ILKRTDHLEESFLKNPNDNLKELENIIIEQEEALRFSSLSYA 45
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 28.3 bits (60), Expect = 0.93
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = +3
Query: 384 YTD-FYRYNEILNHLNTLKESYANNPNINVDIIQHGVTDQNRPLVYLKISRATTA----- 545
+TD F++ + L +N+ A+ +++ G+T + R ++ LK++ +
Sbjct: 175 FTDIFFKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEK 234
Query: 546 IR--PVVIIEAGIIPNEWITIPAV 611
IR V+II+ G EWI IP+V
Sbjct: 235 IRNKKVIIIQGGSHAREWIGIPSV 258
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 1.6
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +3
Query: 303 SLHVTDVFEFLKEKDPTPMLRNNRNFDYTDFYRYNEILNHLNTLKESYANNPN-INVDII 479
+L TD F K P P L F++ N++ N++ L +++NN N + D++
Sbjct: 170 ALKATDAFNTTKVFFPVPDLDTQYLTPIFQFFQENQLANNIAGL--AFSNNVNPLPADLV 227
Query: 480 ---QHGVTDQNRPLVYLK-ISRATTAIRPVVIIEA 572
+ + PL LK I R I P +I +A
Sbjct: 228 GLPRLSIQKFESPLEILKCIQRGIDIIVPDMITQA 262
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 YLSKFYCLVVFFLKMFLFYCSLAI-IAVVSAKNEEYM 113
+L++F+CL+ F FLF+ + I +S + +M
Sbjct: 283 FLARFFCLIFFPFLFFLFWFYMHFNILTISGPGDSFM 319
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 332 KFKYVSYMQTPFDTQFFELLFEPWEMRRRNHGL 234
+FKYV + D Q LL + +E+R+ N+GL
Sbjct: 1475 EFKYVYKEISLLDEQKLSLLHQVYEIRKLNNGL 1507
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 366 NNRNFDYTDFYRYNEILNHLNTLK--ESYANNPNINV 470
++RN DY D N L+ ++ LK + N P+ N+
Sbjct: 1013 HHRNIDYVDLLEQNFFLSFVSNLKIIDKKNNEPDENI 1049
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 607 AGIVIHSLGIIPASIITTGLMAVVALDIFK 518
+G V SLGI +S+I L V+A+ IFK
Sbjct: 1062 SGCVFVSLGIYLSSLIVPLLTGVLAVYIFK 1091
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 443 LRKQSKYQRRHYTTWSYRPESSISIFEDIQ-GHHRH 547
L+KQS + YTTW R E I ++ + G +R+
Sbjct: 565 LKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRY 600
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 363 RNNR-NFDYTDFYRYNEILNHLNTLKESYANNP 458
RN++ N++Y DF NE+L L TL NNP
Sbjct: 253 RNDKENYNYPDFSNDNELLFSLATL--IVENNP 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,833
Number of Sequences: 5004
Number of extensions: 62827
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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