Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o07f
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841...    28   5.1  
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317...    27   8.9  
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565...    27   8.9  
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           27   8.9  

>01_03_0206 -
           13783169-13783651,13783761-13783903,13783962-13784128,
           13784641-13785149,13786031-13786312,13786397-13786792,
           13787232-13787504
          Length = 750

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 223 LRCRFGRCQNSIKSLLSRWNLSCCSW 146
           LR R  RC  S+K  +  +NLSC +W
Sbjct: 336 LRLRTQRCYRSLKLNIPLFNLSCKNW 361


>06_01_0449 -
           3176135-3176329,3176531-3177289,3177420-3177905,
           3178302-3178421,3178637-3178703,3178784-3179007,
           3179149-3179234,3179936-3180509
          Length = 836

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 147 QEQQDKFHLLKSDLIEFWQRPNLQR-NVVGQAMVPPSHFPWFEEQLEKLGIERSLHVTDV 323
           Q++ ++  + + ++    QR N Q  N++GQ      HF W   + ++L  ER   V +V
Sbjct: 383 QQEFEQLKIQQDEVTVELQRVNEQNENLLGQLSDSREHFEWLLSEHDQLLRERDNAVREV 442

Query: 324 FEFLKEK 344
            E L++K
Sbjct: 443 -EELRQK 448


>03_05_1149 +
           30753463-30754695,30754834-30755017,30755321-30756549,
           30756702-30756816,30757126-30758084
          Length = 1239

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 486 GVTDQNRPLVYLKISRATTAIRPVVIIEAGIIPNEWI 596
           GV ++NR L  +K+++     + VV I AG+  N ++
Sbjct: 301 GVLERNRMLKTVKLTKCCLRDKAVVYIAAGLFKNSYL 337


>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 426 LDDLRFHCTYKNRCSQNFCCFLTLVLDPFLLKIQIRQLHANS 301
           +D+ R H   K RC +  CC  + V +   L+   +Q H NS
Sbjct: 146 IDEARLHLNQKKRCCEESCC--SYVGNFHELQKHTQQKHPNS 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,368,656
Number of Sequences: 37544
Number of extensions: 384247
Number of successful extensions: 1077
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)