Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o07f
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 29   2.2  
SB_23349| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_40320| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)                 29   3.0  
SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)                 29   3.9  
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_15763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)                 28   6.9  
SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)                28   6.9  
SB_32285| Best HMM Match : Metallophos (HMM E-Value=2.4e-07)           27   9.1  

>SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 25/94 (26%), Positives = 46/94 (48%)
 Frame = +3

Query: 171 LLKSDLIEFWQRPNLQRNVVGQAMVPPSHFPWFEEQLEKLGIERSLHVTDVFEFLKEKDP 350
           L  +D  +FW   +     V   M+P   F     Q+   GI  ++++ DV + L E+  
Sbjct: 40  LESTDKFDFWTHVSHVGKPV-DIMIPEKDFNTVSRQMSDKGIPFTVNIPDVHK-LVEQFE 97

Query: 351 TPMLRNNRNFDYTDFYRYNEILNHLNTLKESYAN 452
           +  ++   +F +TD+ R +EI + L +L+  Y N
Sbjct: 98  SRRVKRAASFSHTDYNRLSEINDKLKSLESKYGN 131


>SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 439

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 227 HIAL*IWSLPEFNQIAFKQMELVLLLLGRKGQ 132
           +I +  W +PEF Q+ F+   +V  + GR G+
Sbjct: 372 NIVVYAWRIPEFRQVLFRHKPVVANMQGRAGE 403


>SB_23349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +3

Query: 369 NRNFDYTDFYRYNEILNHLNTLKESYANNPNINVDIIQHGVTDQNRPLVYLKISRATTAI 548
           +R  DY D+ + +++  HL +L +   N   IN  I    V  ++ P V L + R    +
Sbjct: 665 DRFLDYDDYLKVDKVYQHLESLVDRAINQFEINEGISLRSV--KHGPAVQLDVYRYDKKL 722

Query: 549 RPVVIIEAGIIPNEW 593
             + ++ A  +  E+
Sbjct: 723 MSIDLVMAFEVSGEF 737


>SB_40320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 346 SFSFKNSNTSVTCKLLSIPNFSSCSSNHGK*EGGTMA*PTTLRC--RFGRCQN 194
           S SFKN NT  +C+       SS +S+     GG     TT +C  R  R QN
Sbjct: 17  SSSFKNVNTQKSCRKSHPYPTSSRASSRSSARGGAKTTKTTKKCTTRKSRTQN 69


>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 227 HIAL*IWSLPEFNQIAFKQMELVLLLLGRKGQ 132
           +I +  W +PEF Q+ F+   +V  + GR G+
Sbjct: 525 NIVVYAWRIPEFKQVLFRHKPVVANVQGRAGE 556


>SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)
          Length = 334

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 227 HIAL*IWSLPEFNQIAFKQMELVLLLLGRKGQ 132
           +I +  W +PEF Q+ F+   +V  + GR G+
Sbjct: 267 NIVVYAWRIPEFKQVLFRHKPVVANVQGRAGE 298


>SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)
          Length = 596

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 227 HIAL*IWSLPEFNQIAFKQMELVLLLLGRKGQ 132
           +I +  W +PEF Q+ F+   +V  + GR G+
Sbjct: 529 NIVVYAWRIPEFRQVFFRHKPVVANVQGRAGE 560


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +3

Query: 138 FSTQEQQDKFHLLKSDLIEFWQRPNLQRNVVGQAMVPPSHFPWFEEQLEKLGIERSLHVT 317
           F  +++  K   + S   E   R  L+ N    A +P S   W+   L KLG ++ L  T
Sbjct: 4   FRIKKKISKSGRMGSIRYERLDRTILKGNPKSTASLPSSLTFWWMNDLLKLGSQQPLEST 63

Query: 318 DVFEFLKE 341
           D++  L E
Sbjct: 64  DLYPLLGE 71


>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2362

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +3

Query: 282 EKLGIERSLHVTDVFEFLKEKDPTPMLRNNRNFDYTDFYRYNEILNHLNTLKESYANNPN 461
           EK  ++ S  +      LK    +          +TD    +E  N+ NT KE  +++ N
Sbjct: 443 EKSSLQVSNAICTCLTSLKSPSKSQQTTKKAKVMFTDSLNIDEKDNNTNTTKELISSHDN 502

Query: 462 INVDIIQHG 488
            NV+ + +G
Sbjct: 503 SNVEKLYNG 511


>SB_15763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 486 GVTDQNRPLVYLKISRATTAIRPVVIIEAGIIPNEWIT 599
           G T + R   Y++I   +   +PV  +  GI   EWIT
Sbjct: 116 GSTYEGRQQYYMEIKGRSLPEKPVFFMNCGIHAREWIT 153


>SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)
          Length = 306

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -3

Query: 299 FDTQFFELLFEPWEMRRRNHGLTDHIAL*IWSLPEFNQIAFKQMELVLLLLGRKGQ 132
           FD  F+    E   +  +      +I +  W +P+F Q+ F+   +V  + GR G+
Sbjct: 225 FDFLFYNYYVEMTLLYLQFSNSCINIVVYAWRIPQFKQLLFRHKPVVANVQGRAGE 280


>SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)
          Length = 517

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 78  IAVVSAKNEEYMGFRVYNLTFSTQEQQDK 164
           I++VS K++ Y GFR    T+ST  QQD+
Sbjct: 179 ISLVSDKHQAYSGFRA---TYSTSGQQDQ 204


>SB_32285| Best HMM Match : Metallophos (HMM E-Value=2.4e-07)
          Length = 562

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 223 LRCRFGRCQNSIKSLLSRWNLSCC-SWVEK 137
           +R  FGR  N   S  SR+NL CC  +VEK
Sbjct: 518 VRYAFGRAVNYQTSSYSRFNLYCCMRFVEK 547


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,931,467
Number of Sequences: 59808
Number of extensions: 425788
Number of successful extensions: 1188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)