Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o05r
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24840.1 68417.m03558 expressed protein                             27   4.6  
At3g46530.1 68416.m05051 disease resistance protein, RPP13-like ...    27   4.6  
At4g12460.1 68417.m01971 oxysterol-binding family protein simila...    27   6.1  
At2g37025.1 68415.m04541 pathogen-responsive DNA-binding protein...    27   8.1  

>At4g24840.1 68417.m03558 expressed protein
          Length = 756

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 370 CLSLCWKMTVHTFSLASNFYKLRKRIFCK 456
           CL  CWK  V  FS A  F +L  ++  +
Sbjct: 467 CLRSCWKEDVLVFSAADKFLRLTLQLLSR 495


>At3g46530.1 68416.m05051 disease resistance protein, RPP13-like
           (CC-NBS class), putative domain signature CC-NBS exists,
           suggestive of a disease resistance protein. Closest
           homolog in Col-0 to RPP13.
          Length = 835

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 247 QESILI-VKDERKFLLHKLLEYENDTESIHSSY 152
           QE +++ ++D+ K LL KLL+YE     I S +
Sbjct: 159 QEEVVVGLEDDAKILLEKLLDYEEKNRFIISIF 191


>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
           to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 694

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 295 SLILENAALCD-EVAKIQESILIVKDERKFLLHKLLEYENDTESIHSSYRSDTLVNLNGP 119
           SL+ E   + D E  ++QE I ++ +ERK LL  L + E       +S   D +  L   
Sbjct: 193 SLVKECEQIVDSEFCEVQEQIKLLHEERKKLLDALRQLEMANLEAEASGIHDDVYQLRNH 252

Query: 118 K 116
           K
Sbjct: 253 K 253


>At2g37025.1 68415.m04541 pathogen-responsive DNA-binding
           protein-related contains weak similarity to BPF-1
           (GI:441310) [Petroselinum crispum]
          Length = 410

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = -1

Query: 208 LLHKLLEYENDTESIHSSYRSDTLVNLNGPKSKVKKKQ 95
           +L  +L+  ++ E I++S+   ++VN   P+++VKK +
Sbjct: 104 ILDGILDGVDEVEDIYASHELSSIVNHFPPETEVKKNE 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,284,179
Number of Sequences: 28952
Number of extensions: 111843
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)