Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o05f
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   0.90 
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    26   3.6  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   8.4  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.4  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   8.4  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 238 DERKFLLHKLLEYENDTESIHSSYRSDTL-VNLNGPKSKVKK 360
           D+R+ +   LL YE    +++ + R D+L  NLN   S +KK
Sbjct: 18  DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKK 59


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 190 LCDEVAKIQESILIVKDERKFLLHKLLEYENDTESIHSSYRSDTLVNLNGPKSKVKKKQT 369
           L +E+  +QE + IV ++R  L+ +L  Y+N  E   +    D L+ L           +
Sbjct: 148 LDEEIQILQEKLAIVTNQRNTLVKRLQTYDN-LEKKKALSMEDRLLTLQEQYDAHANVSS 206

Query: 370 LEDR 381
           LE R
Sbjct: 207 LEKR 210


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 235 KDERKFLLHKLLEYENDTESIHSSYRSDTLVNLNGPKSKVKKKQTLEDR 381
           KDE     + L E  N+T+   S  + D     +   +KV K + LED+
Sbjct: 9   KDESISTKNALEEKSNETKDETSKRKHDPAEEESAVSTKVSKSEPLEDK 57


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = +1

Query: 166 SLILENAALCDEVAKIQESILIVKDERKFLLHKLLEYENDTESIHSSYRSDTL---VNLN 336
           SL  E   L  +  K  E I  + + +   +H+++E+E+    + SS R++++       
Sbjct: 486 SLHAEVKLLRQKYQKTNEIISKMLNSQDTAVHRIIEFEDQLARL-SSVRNNSIKQSTTFQ 544

Query: 337 GPKSKVKKK-QTLEDR*SYL 393
             KS  K   Q LE++ SYL
Sbjct: 545 VKKSSQKSTIQNLEEKVSYL 564


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 124 VFFYQFQSGSGCLSLCWKMTVHTF 53
           V F  FQ G GC    W + +  F
Sbjct: 182 VIFVVFQIGGGCSKNIWSLVIFRF 205


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 486 VMYFCNNYHPYQSIVIFI 433
           V YFCN Y  +Q I+I I
Sbjct: 8   VSYFCNRYSCWQLIIIGI 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,889
Number of Sequences: 5004
Number of extensions: 28421
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)