Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o05f
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_44113| Best HMM Match : CAT (HMM E-Value=0.62)                      29   1.6  
SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)                  28   3.7  
SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)                  28   4.9  
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 178 ENAALCDEVAKIQESILIVKDERKFLLHKLLEYENDTESIHSSYRS 315
           EN  L  +VA +Q+ I  +K   + LL +   Y N   S  SSY S
Sbjct: 200 ENERLHRQVADLQKQISDLKATNEVLLEQNARYRNQANSASSSYYS 245


>SB_44113| Best HMM Match : CAT (HMM E-Value=0.62)
          Length = 344

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 202 VAKIQESILIVKDERKFLLHKLLEYENDTESIHSSYRSDTLVNLN 336
           + K+ E     K+E K +L K+L+ +N  E I  SYR   +V L+
Sbjct: 13  IYKLTEEEAKPKEENKSILLKMLKNKNLNEFIKESYREKNIVILD 57


>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
          Length = 332

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +1

Query: 196 DEVAKIQESILIVKDERKFLLHKLLEYENDTESIHSSYRSDTLVNLNGPKSKVKKK 363
           DEV K++E I ++++E+K L  +L   +    ++ S  ++  L N N  + + K+K
Sbjct: 71  DEVKKLKERIHVLEEEKKRLEEELASVKYKLTALESEVKA--LSNANDRQEEEKQK 124


>SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)
          Length = 402

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 214 QESILIVKDERKFLLHKLLEYENDTESIHSSYRSD 318
           Q+  +I KDE K L  +   Y +  ESIH++  SD
Sbjct: 112 QDITIICKDEIKKLRKQTENYNDRRESIHTAVHSD 146


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -2

Query: 415  YIKYILYINNFIYLLKFVFFSL 350
            ++K+++++N FI+LL F F S+
Sbjct: 1008 FLKWLMFVNLFIFLLTFGFTSV 1029


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,393
Number of Sequences: 59808
Number of extensions: 169834
Number of successful extensions: 363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)