Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o05f
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-4|AAC19237.1|  415|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p...    27   7.6  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    27   7.6  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    27   7.6  
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle...    27   7.6  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    27   7.6  
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z66565-3|CAA91479.1|  177|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF067949-4|AAC19237.1|  415|Caenorhabditis elegans Hypothetical
           protein T10H9.3 protein.
          Length = 415

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 196 DEVAKIQESILIVKDERKFLLHKLLEYENDTESIHSSYRSDTLVNLNGPKSKVKKKQTLE 375
           DE+ K+Q+ +  +         K+LE + D E IH  +   T  N+      ++K  T  
Sbjct: 331 DEILKLQQHLTEIASLHTVFSEKVLEQDRDVELIH-DHALHTTENITDGNEWIRKAITNS 389

Query: 376 DR-*SYLYIKYI*CSCLFMYYKYYN 447
            +  ++L    +  S   ++  +YN
Sbjct: 390 GKQRAFLLFSIVVLSFALLFIDWYN 414


>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 319 YHFYN*NEYFQYHFHILVVYVVKTFSHLLQSECSLVFWPPHHIVL 185
           Y F N +    +HF+I +++  +  S  LQS  +L     HH+VL
Sbjct: 45  YFFLNYSNLLAFHFNIKILFFFQFCSCFLQS-ATLAISQTHHLVL 88


>Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 172 ILENAALCDEVAKIQESILIV-----KDERKFLLHKLLEYENDTESIHSSYRSDTLVNLN 336
           ++ N AL D++ K    I ++      +     +  L +Y N    + SS  S TLVN  
Sbjct: 165 VVINVALVDQIGKTDIVIKLIYVYDGPNVNSRFVGNLYDYVNSPTLMKSSGNSTTLVNYY 224

Query: 337 GPKS 348
           GP S
Sbjct: 225 GPTS 228


>Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 172 ILENAALCDEVAKIQESILIV-----KDERKFLLHKLLEYENDTESIHSSYRSDTLVNLN 336
           ++ N AL D++ K    I ++      +     +  L +Y N    + SS  S TLVN  
Sbjct: 165 VVINVALVDQIGKTDIVIKLIYVYDGPNVNSRFVGNLYDYVNSPTLMKSSGNSTTLVNYY 224

Query: 337 GPKS 348
           GP S
Sbjct: 225 GPTS 228


>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
            protein 73, isoform b protein.
          Length = 1638

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 229  IVKDERKFLLHKLLEYENDTESIHSSY 309
            I K     LLH+L++YEN  E++ +S+
Sbjct: 1261 IFKFHNDKLLHELIKYENQPEAVGASF 1287


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
            protein 73, isoform f protein.
          Length = 2140

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 229  IVKDERKFLLHKLLEYENDTESIHSSY 309
            I K     LLH+L++YEN  E++ +S+
Sbjct: 1261 IFKFHNDKLLHELIKYENQPEAVGASF 1287


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
            protein 73, isoform a protein.
          Length = 2488

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 229  IVKDERKFLLHKLLEYENDTESIHSSY 309
            I K     LLH+L++YEN  E++ +S+
Sbjct: 1261 IFKFHNDKLLHELIKYENQPEAVGASF 1287


>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73B protein.
          Length = 1638

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 229  IVKDERKFLLHKLLEYENDTESIHSSY 309
            I K     LLH+L++YEN  E++ +S+
Sbjct: 1261 IFKFHNDKLLHELIKYENQPEAVGASF 1287


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73A protein.
          Length = 2488

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 229  IVKDERKFLLHKLLEYENDTESIHSSY 309
            I K     LLH+L++YEN  E++ +S+
Sbjct: 1261 IFKFHNDKLLHELIKYENQPEAVGASF 1287


>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
           protein F55C5.4 protein.
          Length = 1010

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 289 ESIHSSYRS--DTLVNLNGPKSKVKKKQTLED 378
           +S+  S+ S  + LVNL G K   KK++ LED
Sbjct: 550 DSVFDSFDSGLNVLVNLYGTKQSKKKRRELED 581


>Z66565-3|CAA91479.1|  177|Caenorhabditis elegans Hypothetical
           protein T04F8.3 protein.
          Length = 177

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 201 LIT*CCVFQY*ALNFHFHIFVFLSASFFSISF 106
           LI  C + +Y   NF F  F FLS+ F+S SF
Sbjct: 130 LIDPCSILEY---NFFFLQFSFLSSYFYSNSF 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,099,293
Number of Sequences: 27780
Number of extensions: 152819
Number of successful extensions: 348
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)