Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o04f
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38642| Best HMM Match : IF4E (HMM E-Value=9.7e-12)                  58   5e-09
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         33   0.16 

>SB_38642| Best HMM Match : IF4E (HMM E-Value=9.7e-12)
          Length = 263

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
 Frame = +1

Query: 337 GIQPTWEDPINEKGGRWIICESKSARNXXXXX--XXXXXXMIGENF-EHPDLICGVVVNI 507
           GI+P WED  N+ GGRW+I  +K+ R              +IGE F E+ + +CG VV I
Sbjct: 2   GIEPMWEDKRNKDGGRWLINTNKNQRQSDLDRFWLETLLCLIGEAFGEYSEGVCGAVVQI 61

Query: 508 KAK-SKISLWT-RGEDKQKNMKIGKTVKE 588
           + K  KI++WT    D++   +IG  +++
Sbjct: 62  RNKGDKIAVWTGNATDEEGTRRIGWVIRD 90


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -3

Query: 491  PQIKSGCSKFSPIISRIRSNHRGSRLRADLLSQ 393
            PQI+   S  SP+ISR RSN +GSRL  D  S+
Sbjct: 1950 PQIRLSTSS-SPVISRDRSNTKGSRLNGDPTSK 1981


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,998,279
Number of Sequences: 59808
Number of extensions: 396142
Number of successful extensions: 1224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)