Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10o04f
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 138 3e-33
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 134 7e-32
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 132 2e-31
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 118 5e-27
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 111 4e-25
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 109 2e-24
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 109 2e-24
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 109 2e-24
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 78 5e-15
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 78 5e-15
Z69793-6|CAI46593.1| 424|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z69793-5|CAA93673.2| 441|Caenorhabditis elegans Hypothetical pr... 28 6.9
AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical ... 28 6.9
Z81579-1|CAB04655.1| 376|Caenorhabditis elegans Hypothetical pr... 27 9.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 9.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 9.1
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 138 bits (334), Expect = 3e-33
Identities = 75/194 (38%), Positives = 112/194 (57%), Gaps = 8/194 (4%)
Frame = +1
Query: 88 ALSSQHETRDGDTSLQSESSPAIKHPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDY 264
ALS+ + D S+ E +HPL++ W+ W L +++KEW L +S F TVED+
Sbjct: 10 ALSASGDVNASDASVPPEL--LTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDF 67
Query: 265 WCLYHYMKLPSELNHGQDYMIFKKGIQPTWEDPINEKGGRWIICESKSARNXXXXXXXXX 444
W LY++++ LN G DY +FK+GI+P WED N +GGRW++ K R
Sbjct: 68 WSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLE 127
Query: 445 XXM--IGENF-EHPDLICGVVVNIKAK-SKISLWTRGEDKQK-NMKIGKTVKEKLNI--N 603
M +GE F E+ D ICG VVN++ K K+SLWTR + N++IG+ +K+KL+I
Sbjct: 128 LLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDT 187
Query: 604 RNISYFNHNTTSAK 645
+ Y H +SA+
Sbjct: 188 EILRYEVHKDSSAR 201
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 134 bits (323), Expect = 7e-32
Identities = 73/196 (37%), Positives = 112/196 (57%), Gaps = 10/196 (5%)
Frame = +1
Query: 88 ALSSQHETRDGDTSLQSESSPAIKHPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDY 264
ALS+ + D S+ E +HPL++ W+ W L +++KEW L +S F TVED+
Sbjct: 10 ALSASGDVNASDASVPPEL--LTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDF 67
Query: 265 WCLYHYMKLPSELNHGQDYMIFKKGIQPTWEDPINEKGGRWIICESKSARNXXXXXXXXX 444
W LY++++ LN G DY +FK+GI+P WED N +GGRW++ K +
Sbjct: 68 WSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQLQRRTQLLDHYW 127
Query: 445 XXM----IGENF-EHPDLICGVVVNIKAK-SKISLWTRGEDKQK-NMKIGKTVKEKLNI- 600
+ +GE F E+ D ICG VVN++ K K+SLWTR + N++IG+ +K+KL+I
Sbjct: 128 LELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIP 187
Query: 601 -NRNISYFNHNTTSAK 645
+ Y H +SA+
Sbjct: 188 DTEILRYEVHKDSSAR 203
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 132 bits (319), Expect = 2e-31
Identities = 75/197 (38%), Positives = 112/197 (56%), Gaps = 11/197 (5%)
Frame = +1
Query: 88 ALSSQHETRDGDTSLQSESSPAIKHPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDY 264
ALS+ + D S+ E +HPL++ W+ W L +++KEW L +S F TVED+
Sbjct: 10 ALSASGDVNASDASVPPEL--LTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDF 67
Query: 265 WCLYHYMKLPSELNHGQDYMIFKKGIQPTWEDPINEKGGRWIICESK---SARNXXXXXX 435
W LY++++ LN G DY +FK+GI+P WED N +GGRW++ K R
Sbjct: 68 WSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRRTQLLDHY 127
Query: 436 XXXXXM--IGENF-EHPDLICGVVVNIKAK-SKISLWTRGEDKQK-NMKIGKTVKEKLNI 600
M +GE F E+ D ICG VVN++ K K+SLWTR + N++IG+ +K+KL+I
Sbjct: 128 WLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSI 187
Query: 601 --NRNISYFNHNTTSAK 645
+ Y H +SA+
Sbjct: 188 PDTEILRYEVHKDSSAR 204
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 118 bits (283), Expect = 5e-27
Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Frame = +1
Query: 133 QSESSPAIKHPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDYWCLYHYMKLPSELNH 309
++E + A +PL+ W++W L ++K W L ++ TF TV ++W LY ++ PS LN
Sbjct: 3 ETEQTTAPIYPLKRNWTWWYLNDERNKSWEDRLKKVYTFNTVSEFWALYDAIRPPSGLNA 62
Query: 310 GQDYMIFKKGIQPTWEDPINEKGGRWIIC--ESKSARNXXXXXXXXXXXMIGENF-EHPD 480
DY +F+ IQP WE P N GGRW+I + K+ ++GE F + +
Sbjct: 63 LCDYNVFRDDIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDME 122
Query: 481 LICGVVVNIKAK-SKISLWTRG-EDKQKNMKIGKTVKEKL 594
ICG+V N++ K SKIS+WT+ D + NM+IG +KEKL
Sbjct: 123 SICGLVCNVRGKGSKISVWTKDCNDDETNMRIGVVLKEKL 162
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 111 bits (267), Expect = 4e-25
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 9/157 (5%)
Frame = +1
Query: 154 IKHP---LEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDYWCLYHYMKLPSELNHGQDY 321
I HP L+ W++W L ++K W L + TF++V ++W L+ +K PS LN DY
Sbjct: 12 ISHPVYKLKRNWTWWYLNDERNKSWEERLKNVKTFSSVGEFWALHDSIKPPSGLNPPSDY 71
Query: 322 MIFKKGIQPTWEDPINEKGGRWIIC--ESKSARNXXXXXXXXXXXMIGENF-EHPDLICG 492
+F+ GI+P WE P N+ GGRW+I + ++ MIGE F + + +CG
Sbjct: 72 NVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCG 131
Query: 493 VVVNIKAK-SKISLW-TRGEDKQKNMKIGKTVKEKLN 597
+V N++ K SKIS+W T D N++IG +K+ LN
Sbjct: 132 IVCNVRGKGSKISVWTTNSADDGANLRIGGVLKQVLN 168
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 109 bits (261), Expect = 2e-24
Identities = 59/151 (39%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
Frame = +1
Query: 160 HPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDYWCLYHYMKLPSELNHGQDYMIFKK 336
+PL+ WS+W L +++ W L ++ TF TV ++W Y + PS LN DY +F+
Sbjct: 9 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 68
Query: 337 GIQPTWEDPINEKGGRW--IICESKSARNXXXXXXXXXXXMIGENF-EHPDLICGVVVNI 507
IQP WE P N GGRW II + K+ +IGE F + + ICG+V N+
Sbjct: 69 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 128
Query: 508 KAK-SKISLWTRG-EDKQKNMKIGKTVKEKL 594
+ + SKIS+WT+ D NM+IG +KEKL
Sbjct: 129 RGQGSKISVWTKNCNDDDTNMRIGVVLKEKL 159
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 109 bits (261), Expect = 2e-24
Identities = 59/151 (39%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
Frame = +1
Query: 160 HPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDYWCLYHYMKLPSELNHGQDYMIFKK 336
+PL+ WS+W L +++ W L ++ TF TV ++W Y + PS LN DY +F+
Sbjct: 48 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 107
Query: 337 GIQPTWEDPINEKGGRW--IICESKSARNXXXXXXXXXXXMIGENF-EHPDLICGVVVNI 507
IQP WE P N GGRW II + K+ +IGE F + + ICG+V N+
Sbjct: 108 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 167
Query: 508 KAK-SKISLWTRG-EDKQKNMKIGKTVKEKL 594
+ + SKIS+WT+ D NM+IG +KEKL
Sbjct: 168 RGQGSKISVWTKNCNDDDTNMRIGVVLKEKL 198
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 109 bits (261), Expect = 2e-24
Identities = 59/151 (39%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
Frame = +1
Query: 160 HPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDYWCLYHYMKLPSELNHGQDYMIFKK 336
+PL+ WS+W L +++ W L ++ TF TV ++W Y + PS LN DY +F+
Sbjct: 9 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRD 68
Query: 337 GIQPTWEDPINEKGGRW--IICESKSARNXXXXXXXXXXXMIGENF-EHPDLICGVVVNI 507
IQP WE P N GGRW II + K+ +IGE F + + ICG+V N+
Sbjct: 69 DIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNV 128
Query: 508 KAK-SKISLWTRG-EDKQKNMKIGKTVKEKL 594
+ + SKIS+WT+ D NM+IG +KEKL
Sbjct: 129 RGQGSKISVWTKNCNDDDTNMRIGVVLKEKL 159
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 78.2 bits (184), Expect = 5e-15
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Frame = +1
Query: 172 HTWSYWLY-TNK--SKEWIHNLVELSTFATVEDYWCLYHYMKLPSELNHGQDYMIFKKGI 342
+T+SY++ T K +++ + + +VE +W + + K P+E+ D FK G+
Sbjct: 37 YTFSYFMRPTGKFDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKADIHFFKTGV 96
Query: 343 QPTWEDPINEKGGRWIICESKSARNXXXXXXXXXXXMIGENFEHPDLICGVVVNIKAKSK 522
+P WEDP N KGG+WII K +IGE F D +CG V +I+ +
Sbjct: 97 KPVWEDPANCKGGKWIIRLKKGLST--RIWENLLMAIIGEQFLVGDELCGAVCSIRNQED 154
Query: 523 -ISLWTR-GEDKQKNMKIGKTVKEKLNINRN--ISYFNHN 630
ISLW R +D +I +T++ L + +N + Y H+
Sbjct: 155 IISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHD 194
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 78.2 bits (184), Expect = 5e-15
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Frame = +1
Query: 172 HTWSYWLY-TNK--SKEWIHNLVELSTFATVEDYWCLYHYMKLPSELNHGQDYMIFKKGI 342
+T+SY++ T K +++ + + +VE +W + + K P+E+ D FK G+
Sbjct: 37 YTFSYFMRPTGKFDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKADIHFFKTGV 96
Query: 343 QPTWEDPINEKGGRWIICESKSARNXXXXXXXXXXXMIGENFEHPDLICGVVVNIKAKSK 522
+P WEDP N KGG+WII K +IGE F D +CG V +I+ +
Sbjct: 97 KPVWEDPANCKGGKWIIRLKKGLST--RIWENLLMAIIGEQFLVGDELCGAVCSIRNQED 154
Query: 523 -ISLWTR-GEDKQKNMKIGKTVKEKLNINRN--ISYFNHN 630
ISLW R +D +I +T++ L + +N + Y H+
Sbjct: 155 IISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHD 194
>Z69793-6|CAI46593.1| 424|Caenorhabditis elegans Hypothetical
protein R03A10.4b protein.
Length = 424
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 316 DYMIFKKGIQ-PTWEDPINEKGGRWIICESKSA 411
DY+ K+GI PT EDP + RW+ E K A
Sbjct: 347 DYVHLKEGINLPTEEDPDDFVFSRWLCREKKLA 379
>Z69793-5|CAA93673.2| 441|Caenorhabditis elegans Hypothetical
protein R03A10.4a protein.
Length = 441
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 316 DYMIFKKGIQ-PTWEDPINEKGGRWIICESKSA 411
DY+ K+GI PT EDP + RW+ E K A
Sbjct: 364 DYVHLKEGINLPTEEDPDDFVFSRWLCREKKLA 396
>AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical
protein Y17D7C.1 protein.
Length = 241
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 566 FIFFCLSSPRVHNDILLFALILTT 495
F+ FCL V+ D LLF LI+ T
Sbjct: 95 FLLFCLQCRVVYGDFLLFFLIILT 118
>Z81579-1|CAB04655.1| 376|Caenorhabditis elegans Hypothetical
protein R13H4.3 protein.
Length = 376
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -1
Query: 199 LCKASSSKCAREDVLLLARTRIED*YHHLASHVDWTVQTSLLIFFKIRNHTIL--LSSLQ 26
+CK ++ KCAR +V L+A+ E ++ + D+ + S FK ++ + L +Q
Sbjct: 145 VCKPTAIKCARHEV-LVAQGDQESNAYYSVKYADFFSELSQTTGFKHCSYMDINGLFDIQ 203
Query: 25 RSNVKNLT 2
R + N+T
Sbjct: 204 RELIHNMT 211
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -3
Query: 473 CSKFSPIISRIRSNHRGSRLRADLLS--QIIQRPPFSLIGSSHVG*IPFLK 327
C +S ++ R+RS+ GS+ DL+ Q I R +LI ++HVG + L+
Sbjct: 309 CCLYSLVLKRLRSSEVGSKYELDLIDFLQEIVRCVRTLI-NTHVGLVLVLR 358
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -3
Query: 473 CSKFSPIISRIRSNHRGSRLRADLLS--QIIQRPPFSLIGSSHVG*IPFLK 327
C +S ++ R+RS+ GS+ DL+ Q I R +LI ++HVG + L+
Sbjct: 309 CCLYSLVLKRLRSSEVGSKYELDLIDFLQEIVRCVRTLI-NTHVGLVLVLR 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,505
Number of Sequences: 27780
Number of extensions: 314297
Number of successful extensions: 893
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -