Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o01r
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0157 - 14547645-14547935                                         46   1e-05
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575...    27   7.2  
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389...    27   7.2  
04_04_0638 - 26877640-26877825,26877954-26878160,26878866-268789...    26   9.6  

>12_02_0157 - 14547645-14547935
          Length = 96

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 283 IDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXLTVPPWPMYR 104
           +D+ GQ  AE L + ++   ++  FV GY +  F   +            +TVP WP + 
Sbjct: 1   MDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 60

Query: 103 RNPLNW 86
           R+PL W
Sbjct: 61  RHPLKW 66


>12_01_0673 -
           5745956-5750346,5750788-5750872,5751018-5751082,
           5751816-5751993
          Length = 1572

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 83  LPVQRIASVHWP--WRNSKNGSKQKSSTKNIH*LREL 187
           LP+ R+ S+     +   ++G  + SS KN+H LREL
Sbjct: 845 LPISRLESIRRLSIYHVKESGGNKVSSIKNLHCLREL 881


>07_01_0524 +
           3892340-3894625,3894995-3895109,3895204-3895298,
           3895929-3896167,3896524-3896610,3896967-3897066,
           3897908-3898115,3898224-3899422
          Length = 1442

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 209 CMGLYSSAILAVSVYSWCW-ISACCHSYCSSMANVPTQSSEL 87
           C   +  A L + + S  W  S+C   +C S   + T S+EL
Sbjct: 750 CPSTFHLACLGIKMPSGDWHCSSCICRFCGSTQEITTSSAEL 791


>04_04_0638 -
           26877640-26877825,26877954-26878160,26878866-26878925,
           26879229-26879435,26879501-26879549,26880138-26880337,
           26880425-26880510,26880585-26880741,26880920-26881084,
           26881817-26882053
          Length = 517

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 263 CLSDVIYVGWYRCKEIHLAKLD*YHLPQQQIILKKLIRSNQLN 391
           CL D+  V W    E H  K +     Q +++ K+   +N+LN
Sbjct: 269 CLGDMYSVAWMEDSETHNLKKETIE-DQYELVKKRTSNANKLN 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,320,626
Number of Sequences: 37544
Number of extensions: 162525
Number of successful extensions: 384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)