Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o01r
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)                      31   0.45 
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           28   3.2  
SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)                 26   9.6  

>SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)
          Length = 475

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 194 YITPYKTNYTEQCNYCPV*FLC-FCLSDVIYVGWYRCKEIHLAKLD*YHLPQQQIILKKL 370
           Y +PY   +T      P+ +LC FCL    +V  + C + H+ K + +H P  +I     
Sbjct: 208 YFSPYPQEFTN----LPMVYLCDFCLK---FVKSFHCLKRHMVKCNLFHPPGNEIYRNGT 260

Query: 371 IRSNQLNG 394
           I   +++G
Sbjct: 261 ISFFEIDG 268


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 114 GHGGTVRMAASRNPA-PRIYTDCENC*TI*PHTKP 215
           G+GG +  A + N + PR  + CEN   I  HTKP
Sbjct: 409 GYGGPLTCANNENTSIPRCSSRCENVVHIIDHTKP 443


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 221 YSWFCMGLYSSAILAVSVYSWCWISACCHSYCSSMANVP 105
           + WFC G  S  +L+  V +  ++++ CH + S +   P
Sbjct: 731 HQWFCHGWLSPVVLSRVVVTSGFVTSGCHEWLSLVVLSP 769


>SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 215 WFCMGLYSSAILAVS--VYSWCWISAC 141
           WFCMG Y + + AV+  V S+C    C
Sbjct: 109 WFCMGYYVNGLKAVAKRVCSYCRKYGC 135


>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
          Length = 1033

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 99  LRRYIGHGGTVRMAASRNPAPRI 167
           +RR+    G +R AASRNP P I
Sbjct: 424 IRRWTHDYGWLRPAASRNPVPSI 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,066,061
Number of Sequences: 59808
Number of extensions: 195032
Number of successful extensions: 393
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)