Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o01r
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   1.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   2.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.8  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 308 IHLAKLD*YHLPQQQIILKKLIRSNQLN 391
           I+   +D  H P    +L+ LIRS QLN
Sbjct: 45  INSRNMDIEHDPGLAAVLQYLIRSGQLN 72


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 197 ITPYKTNYTEQCN 235
           +TPY  NYT+ C+
Sbjct: 443 VTPYNKNYTKFCS 455


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 301 TSIPTHIDYVGQA 263
           TS+PT+I Y+G+A
Sbjct: 652 TSMPTYICYLGKA 664


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/41 (19%), Positives = 17/41 (41%)
 Frame = -1

Query: 289 THIDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVY 167
           T  DY  +      +++I  +  +    W Y+   +S+  Y
Sbjct: 110 TRFDYFARTVPPDTFQSIALVDVVKSANWSYVSTVYSEGSY 150


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 387 NWLLLISFFKIIC 349
           NWLLLI    I C
Sbjct: 3   NWLLLIVCLSIAC 15


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/41 (19%), Positives = 17/41 (41%)
 Frame = -1

Query: 289 THIDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVY 167
           T  DY  +      +++I  +  +    W Y+   +S+  Y
Sbjct: 200 TRFDYFARTVPPDTFQSIALVDVVKSANWSYVSTVYSEGSY 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,973
Number of Sequences: 438
Number of extensions: 2088
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)