Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o01r
         (397 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g40042.1 68417.m05669 expressed protein                             45   2e-05
At2g22425.1 68415.m02659 expressed protein weak similarity to Sw...    44   3e-05

>At4g40042.1 68417.m05669 expressed protein
          Length = 155

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = -1

Query: 283 IDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXLTVPPWPMYR 104
           +D+ GQ  AE+L + ++ + ++V FV GY    F   +            +T+P WP + 
Sbjct: 63  MDWQGQKLAEQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWPCFN 122

Query: 103 RNPLNW 86
           R+ L W
Sbjct: 123 RHHLKW 128


>At2g22425.1 68415.m02659 expressed protein weak similarity to
           Swiss-Prot:Q9Y6A9 microsomal signal peptidase 12 kDa
           subunit (SPase 12 kDa subunit, SPC12, HSPC033) [Homo
           sapiens]
          Length = 92

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -1

Query: 283 IDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXLTVPPWPMYR 104
           +D+ GQ   E+L + ++ +  +V  V GY  + F   +            +TVP WP Y 
Sbjct: 1   MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60

Query: 103 RNPLNW 86
            +PL W
Sbjct: 61  LHPLKW 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,763,609
Number of Sequences: 28952
Number of extensions: 139199
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)