Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o01f
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   2.3  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   5.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   6.9  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   6.9  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    24   9.1  

>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +3

Query: 105 TNPHRLRRTSKSREIIQGNNYIVQYSWFCMGLYSSAILAVSVYS 236
           T+P+ L + ++   +++ N Y+VQ     + LY++++ +   Y+
Sbjct: 261 THPNVLDKWNEFISLLKSNGYLVQEIQLPISLYANSVYSTMAYA 304


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 150 IQGNNYIVQYSWFCMGLYSSAILAVSVYSWC 242
           + G+N  V+ SWF M  Y   + + +V  +C
Sbjct: 304 LYGSNEEVENSWFHMHFYPPLLRSATVKKFC 334


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 88  DFFTSIPTHIDYVGQAKAEKL 150
           D ++ +P++++Y   AKAEKL
Sbjct: 843 DTWSRLPSNLEYCSWAKAEKL 863


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 345 CWFVITVLRNLPVQRIASVHWPWRNSKN-GSKQKSSTKNIH*LRELLNYITPYKTNY 178
           C  +I  LR L   ++  V    R +K+ G+KQ S  +++  L+ L+NY      +Y
Sbjct: 331 CPDLIMSLRFLRFLQLVKVTHDQRLTKSKGTKQISQEEDLRILQPLMNYAQELSNDY 387


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 427 LTIGYI*EVKVVQTNFEIMNFTSFL 353
           LTIGYI  + +V T+F + N +  L
Sbjct: 298 LTIGYIKVIPMVSTSFFVYNHSKAL 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,194
Number of Sequences: 5004
Number of extensions: 30054
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)