Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n24r
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    31   0.11 
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    26   4.2  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   4.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   5.6  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   9.7  

>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +3

Query: 195 QHVSGDSTVNGSVTLDAGILIDGPDLDVTELLRIRPSEYGQ*AALRIDLWLRM 353
           QH+SG S   G +TLD+ +L D   + VTE  R   + Y   A  R ++ L++
Sbjct: 190 QHISGTSPSPGFITLDS-LLSDVNRMIVTEQARFIKNPYDNMAKKRFEILLQL 241


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 67  GKR-RSAQYCPQEQTPTRTRLWRRGPPESPWHWSRP 171
           GKR R + Y PQE      +L +R   + PW  +RP
Sbjct: 57  GKRLRKSMYQPQEIQWPEDKLRKRFYRDHPWELARP 92


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 394 TWNWNQWWQSCGG 356
           T N+  WW SCGG
Sbjct: 114 TVNYPTWWDSCGG 126


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 367  SCGGNILNQRSILSAAHCPY 308
            +  GN+LN  +  S ++CPY
Sbjct: 1451 TAAGNLLNPNATTSCSYCPY 1470


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -3

Query: 349 LNQRSILSAAHCPYSEGLIRSNSVTSRSGPSIRMPASNVTDPLTVLSPLTCCALVFWTSV 170
           +NQ++I +    P S  L + + +   S    R PAS   + L+ L P+       W ++
Sbjct: 83  INQQNIFAKPVKPASSELPQVSRLNGASQFPSREPASTAINKLSDLQPMAS----IWENI 138

Query: 169 VATSARVTP 143
           V     + P
Sbjct: 139 VPEKPAIIP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,451
Number of Sequences: 5004
Number of extensions: 49922
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)