Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n24f
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    31   0.12 
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    26   4.6  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   4.6  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   6.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   6.1  

>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 355 QHVSGDSTVNGSVTLDAGILIDGPDLDVTELLRIRPSEYGQ*AALRIDLWLRM 197
           QH+SG S   G +TLD+ +L D   + VTE  R   + Y   A  R ++ L++
Sbjct: 190 QHISGTSPSPGFITLDS-LLSDVNRMIVTEQARFIKNPYDNMAKKRFEILLQL 241


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 483 GKR-RSAQYCPQEQTPTRTRLWRRGPPESPWHWSRP 379
           GKR R + Y PQE      +L +R   + PW  +RP
Sbjct: 57  GKRLRKSMYQPQEIQWPEDKLRKRFYRDHPWELARP 92


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 156 TWNWNQWWQSCGG 194
           T N+  WW SCGG
Sbjct: 114 TVNYPTWWDSCGG 126


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 183  SCGGNILNQRSILSAAHCPY 242
            +  GN+LN  +  S ++CPY
Sbjct: 1451 TAAGNLLNPNATTSCSYCPY 1470


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 581 YGAFIFELRSFFNIFTNWIGSK 516
           Y   I +L  +F +FT W+G +
Sbjct: 79  YSTIIKKLTPWFTVFTTWVGEE 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,791
Number of Sequences: 5004
Number of extensions: 52555
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)