Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n24f
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 32 0.38
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162 31 0.89
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659... 30 1.2
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 29 2.0
12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800 29 2.7
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 29 2.7
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 29 2.7
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 29 3.6
10_08_0108 + 14860469-14861032 28 4.7
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242 28 4.7
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 4.7
05_01_0570 + 5061600-5062142,5062790-5062972 28 4.7
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 6.2
04_01_0450 - 5840015-5840055,5840635-5840977,5841326-5841537,584... 28 6.2
03_04_0178 - 18131238-18131629,18137138-18137303,18137711-181379... 28 6.2
02_04_0411 + 22670418-22670499,22670708-22671045 28 6.2
03_06_0632 + 35196608-35197087,35198205-35198424,35198521-35198807 27 8.2
03_06_0519 - 34481751-34482722 27 8.2
03_05_0065 + 20450814-20452748 27 8.2
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598... 27 8.2
02_02_0572 + 11667455-11670783,11672026-11672419 27 8.2
02_01_0737 + 5492446-5492770,5492818-5493614 27 8.2
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 509 NGKRER*HQGSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRR 372
+ +RER HQ + + +SR +RG G G H +H G G RR
Sbjct: 1024 SSRREREHQEAQEEPR---RSRERRGGGSDGNHHHNHGGGGGHKRR 1066
>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
Length = 213
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -3
Query: 482 GSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKH 363
G D R +P R +RG G G E H G G H H
Sbjct: 69 GDDDMRPRLPTERWRRGGGRGEERHTGGGGGGSHHAHYAH 108
>01_05_0671 -
24164490-24164544,24164920-24165086,24165787-24165941,
24166291-24166458,24167471-24167552
Length = 208
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = +2
Query: 23 YAVYHYFVGPW-AC---CCGGCSYQPTKDYWWLHD---QH*PVSRYSC 145
+ +YH+ GPW C C GG Y+ Y L D +H PV SC
Sbjct: 83 HEIYHWVAGPWMKCSSPCDGGVRYRDVACYGNLSDATIKHYPVDDASC 130
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 81 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 197
TNPQ +IGGS + ++ Y + Y +++ W GGN
Sbjct: 251 TNPQFVIGGSLSPVSIY---GSTQYEYDYLVWKDPAGGN 286
>12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800
Length = 64
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -2
Query: 435 RTRLWRRGPPESPWHWSRPPTSKTPEHN 352
R LW PE PW W + + HN
Sbjct: 33 RQGLWAYDNPEKPWEWRKNKRKASEHHN 60
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -2
Query: 489 TPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSR 382
T KR +E LW G PE PW W R
Sbjct: 320 TYDKRPEFARWEREARAANRGLWASGNPEKPWDWRR 355
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 81 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 197
TNPQ +IGGS + ++ Y Y +++ W GGN
Sbjct: 254 TNPQFVIGGSISPVSTY---GDTQYEYDYLVWKDPAGGN 289
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 426 LWRRGPPESPWHWSR 382
LW G PE PW W R
Sbjct: 279 LWASGNPEKPWDWRR 293
>10_08_0108 + 14860469-14861032
Length = 187
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 456 PQEQTPTRTRLWRRGPPESPWHWSR 382
P+ P R R WRR +PWH R
Sbjct: 23 PRTTLPLRCRRWRRRRRLAPWHGGR 47
>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
Length = 509
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 165 WNQWWQSCGGNILNQRSILSAAHCPYSEGLIRSNSVTSRSGPS 293
W + Q C IL+ + +LS H E ++R N + + +GP+
Sbjct: 127 WRKLRQLCAAEILSPKRVLSFRHIREDEVMMRVNEIRA-AGPT 168
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -2
Query: 519 QEVKRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPP----TSKTP 361
+EV+ R++TP R+ + TP R R PP+ S PP TS++P
Sbjct: 5 KEVRYTARSITPPADRNGTSKSKSPTPVRRSTSRSPPPKKSDSRSPPPRRRSTSRSP 61
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 470 QRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 351
+R+T +SR GRG G R G RRP+ + TT
Sbjct: 142 RRATRARSRLSAGRGDGVGGARGRAVRGSARRRPRKEETT 181
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -2
Query: 453 QEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEH 355
Q+ P ++W + PP P W + P P +
Sbjct: 34 QQYAPPPPQMWGQAPPPPPQMWGQAPPPPQPAY 66
>04_01_0450 -
5840015-5840055,5840635-5840977,5841326-5841537,
5842381-5842477
Length = 230
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 515 R*NGKRER*HQGSDGQRSTVPKSRHQRGRGCGGEDHR-SHPGTG 387
R +G+R R QG D + + + G G GE+HR S G G
Sbjct: 11 RGDGRRLRSGQGGDASDTDSDEEQMWHGHGAWGEEHRDSKDGKG 54
>03_04_0178 -
18131238-18131629,18137138-18137303,18137711-18137902,
18138070-18138258
Length = 312
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 183 SCGGNILNQRSILSAAHCPYSEGLIRSNSVTSR--SGPSI-RMPASNVTDPLTVLSPLTC 353
SC +L R+++SAA C S L + S T +GP+ + V D L C
Sbjct: 48 SCPAALLTIRTVVSAAGCDASVLLDDTGSFTGEKGAGPNAGSLRGFEVVDNAKTLLETVC 107
Query: 354 CALVFWTSVVATSAR 398
V ++A +AR
Sbjct: 108 PQTVSCADILAVAAR 122
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = +2
Query: 377 GGRDQCQGDSGGPLLHNRVLVGVCSWGQYCADR 475
GG D GD GGP H R G C G Y DR
Sbjct: 96 GGGDD--GDCGGPCEHRRCEYGCCE-GGYGGDR 125
>03_06_0632 + 35196608-35197087,35198205-35198424,35198521-35198807
Length = 328
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 353 LCSGVLDVGGRDQCQGDSGGPLLHNRVLVGVCSWGQYCADRR 478
+C G + GG + GD+ G LL N+ + S+ Q C +RR
Sbjct: 289 ICRGCAEGGGEGKGSGDNTGYLLTNKWI----SYVQKCPERR 326
>03_06_0519 - 34481751-34482722
Length = 323
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 489 TPGKRRSAQYCPQEQTPTRTRLWRR---GPPESPWHWSRPPTSKTP 361
TPG +A P +PT R R PP+ P + PPTS +P
Sbjct: 80 TPGAAAAA---PTSSSPTAARRSNRLAGAPPDPPAAVAAPPTSSSP 122
>03_05_0065 + 20450814-20452748
Length = 644
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 398 GDSGGPLLHNRVLVGVCSWGQYCADRR 478
GD+ G + +N ++ G C GQ A RR
Sbjct: 74 GDAAGVVAYNAMVAGYCRAGQLAAARR 100
>03_02_0741 -
10857656-10857844,10858315-10858848,10859516-10859824,
10860521-10860622,10861446-10861613,10862734-10862847,
10863003-10863107,10863206-10863336,10863680-10863804,
10863890-10864061,10864411-10864505,10864771-10864841,
10864923-10865009,10865119-10865184,10865401-10865499,
10866631-10866672,10866757-10866822,10866910-10867101,
10867224-10867289,10868473-10868811
Length = 1023
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 190 PQDCHH*FQFHVYNKAAIPGYWLMLVVEPPIILCGLV 80
P+DCH + ++ PG+++ + V+ P +L LV
Sbjct: 108 PEDCHTVIALPLPHQPLFPGFFMAMSVKDPKLLKALV 144
>02_02_0572 + 11667455-11670783,11672026-11672419
Length = 1240
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = -3
Query: 500 RER*HQGSDGQRSTVPKSRHQRGRGC--GGEDH-RSHPGTGRDHRRPKHQSTTC 348
R R +G D R + R R GG DH RSH G RDH R + + C
Sbjct: 149 RRRDERGRDRGRDDRGRDDGGRDRDYERGGRDHDRSH-GRDRDHGRDRDRDRAC 201
>02_01_0737 + 5492446-5492770,5492818-5493614
Length = 373
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 428 GCGGEDHRSHPGTGRDHRRPKH-QSTTC*R**HG*WVCNVG 309
G GGE R+HP +G KH S R HG W+ G
Sbjct: 69 GGGGEVRRAHPLSGSGLTGAKHGMSFVAVRSEHGSWILGAG 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,492,971
Number of Sequences: 37544
Number of extensions: 417178
Number of successful extensions: 1356
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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