Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n24f
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    49   4e-08
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 22/55 (40%), Positives = 35/55 (63%)
 Frame = +3

Query: 84  NPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYSE 248
           NP RI+GG+ T IN++P +A +  T+   +    CG  I+++R +L+AAHC   E
Sbjct: 157 NPSRIVGGTNTGINEFPMMAGIKRTY---EPGMICGATIISKRYVLTAAHCIIDE 208



 Score = 48.0 bits (109), Expect = 7e-08
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
 Frame = +2

Query: 266 LRHV-QVWTINQNACVQRYRPINRAITANMLCSGVLDVGGRDQCQGDSGGPLLHNR---- 430
           L H+ Q  T+N    V+ Y+     I  N +C+      G+D CQ DSGGP+L       
Sbjct: 306 LSHILQKTTLNMLTQVECYKYYGN-IMVNAMCAYAK---GKDACQMDSGGPVLWQNPRTK 361

Query: 431 --VLVGVCSWGQYCADRRFPGVNVRVSRFTSWIQSNS 535
             V +G+ SWG  C   ++P  N +V  +  WI S +
Sbjct: 362 RLVNIGIISWGAECG--KYPNGNTKVGSYIDWIVSQT 396


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 201 LNQRSILSAAHCPYSEGLIRSNSVTSRSGPSI 296
           ++ +S LS A   Y EG +R      RSG  I
Sbjct: 456 ISDKSALSLAGGLYDEGTVRRRVAVDRSGIDI 487


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 476 DGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDH 378
           D + S +P  R++ G   G     S PGTGR+H
Sbjct: 374 DLRMSPLPSIRNRSGLVSGS----STPGTGREH 402


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 120  INQYPGIAALLYTWNWNQWWQ 182
            +  Y   AA + TWN  ++W+
Sbjct: 1178 LRPYLRTAAAILTWNEKRFWE 1198


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 74  SRHSSKPKGQQNN 36
           +RHSSK   Q NN
Sbjct: 432 ARHSSKSDNQNNN 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,389
Number of Sequences: 438
Number of extensions: 3679
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)