Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n24f
(583 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05030.1 68415.m00525 hypothetical protein 32 0.24
At5g01840.1 68418.m00103 ovate family protein 59% similar to ova... 30 1.3
At3g21610.1 68416.m02726 expressed protein contains Pfam domain,... 29 1.7
At2g40760.1 68415.m05028 rhodanese-like domain-containing protei... 29 1.7
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ... 29 3.0
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 29 3.0
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 29 3.0
At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR ... 28 4.0
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 28 4.0
At2g48020.2 68415.m06011 sugar transporter, putative similar to ... 28 4.0
At2g48020.1 68415.m06010 sugar transporter, putative similar to ... 28 4.0
At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to ... 28 5.2
At2g17240.1 68415.m01991 expressed protein 28 5.2
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 5.2
At5g67300.1 68418.m08486 myb family transcription factor contain... 27 6.9
At5g01280.1 68418.m00037 expressed protein 27 6.9
At3g24506.1 68416.m03075 expressed protein 27 6.9
At5g20200.1 68418.m02406 nucleoporin-related contains weak simil... 27 9.1
At1g63720.1 68414.m07211 expressed protein similar to putative p... 27 9.1
>At2g05030.1 68415.m00525 hypothetical protein
Length = 205
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 479 SDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQS 357
S G+RS +P+S G +DHR G +DHRR + Q+
Sbjct: 65 SSGERS-LPRSSTSTDDRVGYQDHRRDQGQDQDHRRDQQQN 104
>At5g01840.1 68418.m00103 ovate family protein 59% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 270
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -2
Query: 540 FYELDWIQEVKRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTP 361
FY+L + + K++ P S + TPT T PP P H S+ P S P
Sbjct: 18 FYKLRDMSKSKKKNLQSQPNSTTSKKKHHAVPTPTSTTPLSPRPPRRPSHSSKAPPSHPP 77
>At3g21610.1 68416.m02726 expressed protein contains Pfam domain,
PF02681: Uncharacterized BCR, COG1963
Length = 174
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 581 YGAFI-FELRSFFNIFTNWIGSKR*NGKR 498
+ AF+ F L F +FTNW KR + KR
Sbjct: 37 FSAFLAFALAQFLKVFTNWYKEKRWDSKR 65
>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
contains rhodanese-like domain PF00581
Length = 474
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 228 AHCPYSEGLIRSNSVTSRSGPSIRMPAS 311
+H P+S G + SNSV S P ++ P S
Sbjct: 27 SHSPFSGGGVNSNSVGGNSKPELQFPQS 54
>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
contains Pfam:PF00320 GATA zinc finger domain
Length = 470
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 483 GKRRSAQYCPQEQTPTRTRLWRRGPPESP 397
GK+ +C TP LWR GPPE P
Sbjct: 2 GKQGPCYHCGVTSTP----LWRNGPPEKP 26
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
profile PF03107: DC1 domain
Length = 1610
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 443 HQRGRGCGGEDHRSHPGTGRDHRRPKH 363
H R RGC GE+H+ + D + P H
Sbjct: 1223 HFRCRGCNGENHKGYEQAPVDVKHPLH 1249
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 483 GKRRSAQYCPQEQTPTRTRLWRRGPPESP 397
GK+ +C TP LWR GPPE P
Sbjct: 2 GKQGPCYHCGVTNTP----LWRNGPPEKP 26
>At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 885
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 219 LSAAHCPYSEGLIRSNSVTSRSGPSIRMPASNVTDPLTVLSPLTCCALVFWT 374
LS + CP E +I + ++ G + P N+T VL L ++WT
Sbjct: 749 LSVSECPQMEEVISKDKAMAKLGNTSEQPFQNLTK--LVLDGLPKLESIYWT 798
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 189 GGNILNQRSILSAAHCPYSEGLIRSNSVTSRSGPSIRMPASNVTDP 326
GG++L+ LSA H PYS ++R +S + S++ P +P
Sbjct: 4 GGSVLS----LSAPHFPYSATILRRHSPVASISFSLKQPPPQPPEP 45
>At2g48020.2 68415.m06011 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 78 PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 191
P N + + GG T +N + G A+ YT+N+ W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426
>At2g48020.1 68415.m06010 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 78 PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 191
P N + + GG T +N + G A+ YT+N+ W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426
>At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to
Ca(2+)-dependent nuclease [Arabidopsis thaliana]
GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
Length = 323
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = -2
Query: 480 KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSR 382
KR E R LW PE PW W +
Sbjct: 285 KRAELAKWENEARQKRVGLWASSNPEKPWEWRK 317
>At2g17240.1 68415.m01991 expressed protein
Length = 140
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2
Query: 480 KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPE 358
+R Q P +L RR P + P W RP + P+
Sbjct: 50 RRNRNQLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPD 90
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 524 GSKR*NGKRER*HQGSDGQRSTVPKSRHQ-RGRGCGGEDHRSHPGTGRDHRR 372
G + +G+ + +G G R R RGRG GG+ R + G G H R
Sbjct: 39 GDRGYSGRGDGHGRGGGGDRGRGYSGRGDGRGRGGGGDRGRGYSGRGDGHGR 90
>At5g67300.1 68418.m08486 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 305
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 431 RGCGGEDHRSHPGTGRDHRRPK 366
R CGG DHR + G+ DHR K
Sbjct: 105 RKCGGYDHRGYDGS-EDHRPVK 125
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -2
Query: 498 RTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTS 370
++ TP KR S T TR L S WSRP +S
Sbjct: 103 KSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSS 145
>At3g24506.1 68416.m03075 expressed protein
Length = 149
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 441 PTRTRLWRRGPPESPWHWSRPPTSKTPE 358
P +L RR P + P W RP + P+
Sbjct: 71 PEEEKLTRRNPLDFPIEWERPKPGRRPD 98
>At5g20200.1 68418.m02406 nucleoporin-related contains weak
similarity to Nucleoporin NUP1 (Nuclear pore protein
NUP1) (Swiss-Prot:P20676) [Saccharomyces cerevisiae]
Length = 762
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 514 GETGNANVNTREATVSAVLSPRADTNEDAVVEE 416
G +G ANVN ++SA +A N+D + E
Sbjct: 128 GPSGTANVNEGNFSISAQRRGKAALNDDVAISE 160
>At1g63720.1 68414.m07211 expressed protein similar to putative
protein GB:CAA18164 [Arabidopsis thaliana]
Length = 358
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 165 WNQW-WQSCGGNILNQRSILSAAHCPYSEGLIRSNSVTSRSG 287
WN+W C G+ ++ I ++ P + SNS TS SG
Sbjct: 41 WNRWSLLKCFGSSRQRKRIGNSVLVPEPVSMSSSNSTTSNSG 82
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,474,239
Number of Sequences: 28952
Number of extensions: 303596
Number of successful extensions: 961
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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