Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n22f
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 33 0.16
03_06_0587 - 34921535-34922041,34922579-34922689 33 0.16
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879... 31 0.64
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 31 1.1
04_01_0446 - 5815231-5816202 31 1.1
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 31 1.1
03_05_0630 + 26260159-26260272,26260520-26260894 30 1.9
08_02_0595 + 19097299-19097462,19097490-19097910 29 2.6
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 29 2.6
04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595... 29 3.4
12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157... 29 4.5
12_02_1219 + 27096477-27096590,27096704-27097078 29 4.5
08_01_0531 - 4604556-4604582,4604829-4604921,4605381-4605572,460... 29 4.5
12_01_0525 - 4169605-4170417 28 5.9
12_01_0242 + 1812891-1812897,1814073-1814830 28 5.9
07_01_0975 + 8223269-8224354 28 5.9
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 28 5.9
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 28 5.9
12_02_0619 - 21276591-21276719,21276798-21276920,21277425-212775... 28 7.8
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248... 28 7.8
04_03_0081 - 10829429-10829758 28 7.8
01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899... 28 7.8
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 33.5 bits (73), Expect = 0.16
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = -2
Query: 350 DDDLDEGSAISAGDSHRGTFNNGRSNRDGLV-GVNKSRSDG-DGLVGVNKS-RSNRDGHV 180
+DD + G + D + T + +SN D L G NKS +D G G NKS +
Sbjct: 708 NDDNESGYKNTNTDEYGSTGSYNKSNTDDLTGGFNKSGTDDYSGGGGYNKSGADDYSSSG 767
Query: 179 GVNKS-RSNRDGFVGVNKSRSN 117
G +KS N G G NKS +N
Sbjct: 768 GYSKSGTDNYSGSGGYNKSGNN 789
Score = 33.1 bits (72), Expect = 0.21
Identities = 43/164 (26%), Positives = 62/164 (37%), Gaps = 2/164 (1%)
Frame = -2
Query: 596 YQ*AGSVEGLGKSD-SGSRDDRGTNNYGLDDFGEDRAGELHG-FRNVDFRKYGSGENNNF 423
Y +G G +D SGS G N D+G + G + D K S ++ +
Sbjct: 777 YSGSGGYNKSGNNDYSGSGG--GYNKSSAGDYGSEYKDSSTGDYGRGDEYKKSSSDDYDG 834
Query: 422 GQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKS 243
G + + N +G G+ G + D D G S D + G+ N S + G NKS
Sbjct: 835 GYKKSSS--NDDGYGGS-GYSKPSTGDYDSGKNASNTDGYGGSGYNKSSTDNSESGYNKS 891
Query: 242 RSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVGVNKSRSNGD 111
+ G G S + G NKS + G G GD
Sbjct: 892 GTGEYGSGGGYNKSSTDNYESGYNKSGTGDYGSGGGYDKSDAGD 935
>03_06_0587 - 34921535-34922041,34922579-34922689
Length = 205
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 581 SVEGLGKSDS-GSRDDR-GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQ 417
S +G G+ D G RDDR G G +G DR G+ + R+ D YG G + + +
Sbjct: 143 SGDGGGRGDRYGGRDDRYGGGGGGGGRYGSDRGGDRYSGRSRDGGGYGGGGGDRYSR 199
>01_01_1111 -
8791925-8792649,8793506-8793890,8794341-8794618,
8794998-8795163
Length = 517
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 222 EPISVGPALVDTYE--PISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSE 371
EP P+++ T + P + VE APVTV DG I N+ PS+
Sbjct: 178 EPYDAPPSVISTEQLNPAAEPVVGVEAAPVTVAEPDGVTTSAITANIPSPSD 229
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 509 RQARNCWYPYHPGSRCHSSRDPQLSQLTD 595
R+ R C++P+ PG R + P++ +L D
Sbjct: 521 RRPRRCFFPFSPGVRVGAMSSPEIQKLAD 549
>04_01_0446 - 5815231-5816202
Length = 323
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -2
Query: 308 SHRGTFNNGRSNR-DGLVGVNKSRSDGDGLVGVNKSRSNRDG--HVGVNKSRSNRDGFVG 138
SH+ + R+ R G G + SDG G VG +SRS DG + G++G
Sbjct: 101 SHKRDIDGARAQRWSGGSGWGRCPSDGSGGVGWGRSRSGSDGWRRMWTEPESGGGGGWIG 160
Query: 137 VNKSR 123
R
Sbjct: 161 TEPKR 165
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 234 VGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAAD 383
VG + + E ++ GP EGA + VTGADG+ L +I +P E+ D
Sbjct: 142 VGVSEHGSLEHVNPGPGDGEGATIPVTGADGSGL---LIEGAQPVEMDVD 188
>03_05_0630 + 26260159-26260272,26260520-26260894
Length = 162
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 296 TFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVG 177
TF++ +S RD + G+N DG + VN+++S R G G
Sbjct: 55 TFSSEQSMRDAIEGMNGKELDGRNIT-VNEAQSRRSGGGG 93
>08_02_0595 + 19097299-19097462,19097490-19097910
Length = 194
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -2
Query: 347 DDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGH 183
DD + S A D +G +G G+ GV GDG+ GV N+DG+
Sbjct: 93 DDAAQPSNKGAADGFQGDQGDGSQ---GVQGVGSQGIQGDGVQGVQGGGLNQDGN 144
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 29.5 bits (63), Expect = 2.6
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Frame = -2
Query: 554 SGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSG----ENNNFGQRLFG--NVLN 393
S ++ + YG FG G G D SG + + G+R N +
Sbjct: 1326 SNPKNGDDNSGYGRGGFGRGNRGRGRGRNFGDSGSSWSGGSYRNDESRGERSEDRWNTRD 1385
Query: 392 INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSD 234
+G G GR D ++G+ +GD++ T+ +GR NRD N +R+D
Sbjct: 1386 SDGGRGR-GRGHFGRGDRNQGNNYGSGDNNDRTWGSGRGNRDQDGCKNWNRND 1437
>04_04_1224 +
31858110-31858338,31859180-31859301,31859398-31859507,
31859661-31859725,31859940-31860004,31860387-31860632,
31861212-31861313,31861484-31861534,31862015-31862105,
31862777-31862841
Length = 381
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 240 PALVDT-YEPISVGPAIVEGAPVTVTGADGTPLVQI 344
PA + T Y P+ VGPA + +P VTG +V +
Sbjct: 290 PARIGTPYHPMQVGPAYISPSPQPVTGGKFNHVVYV 325
>12_02_1262 +
27415191-27415279,27415367-27415565,27415635-27415775,
27415939-27416003,27416111-27416489,27416688-27417149,
27417226-27417546,27418184-27418501
Length = 657
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 314 GDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKS 204
GDS G N G +DG+ + S +D D VNKS
Sbjct: 239 GDSANGVENYGHKLKDGISSITSSETDND---DVNKS 272
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 296 TFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVG 177
TF++ ++ RD + G+N DG + VN+++S R G G
Sbjct: 55 TFSSEQAMRDAIEGMNGKELDGRNIT-VNEAQSRRSGGGG 93
>08_01_0531 -
4604556-4604582,4604829-4604921,4605381-4605572,
4605800-4606390
Length = 300
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 41 ICDHHRRLRCRGHSRPCPWQ 100
+ H R L CRG +RP PW+
Sbjct: 57 VARHARALLCRGCARPTPWR 76
>12_01_0525 - 4169605-4170417
Length = 270
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = -2
Query: 368 GRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRD 189
G + V ++ + G GD G RSN + G G GV S ++
Sbjct: 32 GERILVGENRNGGGGYGGGDRRAGREGRTRSNTLAIAASFAKLEGGGGGDGVRVSNHSKP 91
Query: 188 GHVGVN 171
+GVN
Sbjct: 92 NAIGVN 97
>12_01_0242 + 1812891-1812897,1814073-1814830
Length = 254
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = -2
Query: 341 LDEGSAISAGDSHRGTFNNGRS-----NRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVG 177
L + SA++ DS G +NN + NRD GVN++R ++ + N GH+
Sbjct: 179 LADSSALA--DSSWGNWNNSNNHHSSNNRDSFNGVNRNRYQDPN--SISGRKRNSGGHIQ 234
Query: 176 VNKS--RSNRDGFVG 138
S R+ +G+ G
Sbjct: 235 QRNSRQRNQTEGYQG 249
>07_01_0975 + 8223269-8224354
Length = 361
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = -3
Query: 325 PSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGPTEMG 146
PS + + A S GPT G +GP+ G+ GP+ G GP+ G
Sbjct: 264 PSGSPSGSPAGSPAGGPTAGGP----ASGPSSYGAASGPAEGPSSSGAASGPAEGPSPSG 319
Query: 145 S*VSTRAGPTEMGS 104
+ GP+ GS
Sbjct: 320 A-AGPAEGPSSYGS 332
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Frame = -2
Query: 455 RKYGSGENNNFG--QRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNG 282
RK+G + N + GN N N +GN R + D S IS ++
Sbjct: 1672 RKHGFITDLNVATSEEALGNTKNWNPYAGNANRGSQRNHHRDRYSQISESWLLSSNYSRS 1731
Query: 281 RSNRDGLVGVNKSRSDGDGLVGVNKSRSN 195
RS+ G G ++S G G+ K N
Sbjct: 1732 RSDGFGTGGSSRSTPRGQTQRGICKFHEN 1760
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = -2
Query: 317 AGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVG 138
AG S G +N +NR G +S+G G + +R N+ G V KS ++ G G
Sbjct: 1368 AGSSRPGEWNRKNNNRGQGGGREVWKSEGPHRGGSSSNR-NQGGGRAVWKSEASHRG-SG 1425
Query: 137 VNKSRSNG 114
N++R G
Sbjct: 1426 NNRNRGGG 1433
>12_02_0619 -
21276591-21276719,21276798-21276920,21277425-21277535,
21277887-21277901,21279117-21279188
Length = 149
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 246 LVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIA 407
+V T + G A+ + + GAD V+I++ + I D +DIA
Sbjct: 78 IVKTQLALPEGTAVTGESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIA 131
>04_04_0766 -
27923120-27923554,27923843-27924580,27924815-27924874,
27925281-27925328
Length = 426
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/91 (26%), Positives = 35/91 (38%)
Frame = +3
Query: 138 TYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGPAIVEGAPVTVTG 317
T +PIS PALVD + S G A + +E + G A VE TV G
Sbjct: 33 TTDPISEDPALVDR-IAASFWDTPPRAAFSSEAGDADIVVFEDLDHGNAAVEATTTTVPG 91
Query: 318 ADGTPLVQIIINVNRPSEIAADPVDVEDIAE 410
+ S+ + + ++DI E
Sbjct: 92 EPHAVAGGEVAECEPNSDNDLEQITMDDIGE 122
>04_03_0081 - 10829429-10829758
Length = 109
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -2
Query: 401 VLNINGISGNLGRTVH-VDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDG 225
+ ++ GI + R V D + S S D +G +G G+ GV GDG
Sbjct: 30 IADVPGIGSSKDREVQQAPDGAAQPSDKSVADGSQGVQGDGSQ---GVQGVGSHGIQGDG 86
Query: 224 LVGVNKSRSNRDGHV 180
G N+DG++
Sbjct: 87 SQGFQGGNLNQDGNM 101
>01_07_0101 +
41086735-41086809,41088634-41088721,41089727-41089923,
41090077-41090266,41090469-41090860,41091390-41091965
Length = 505
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 380 SGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD-GLVGVNKSRSDGDGLVGVNKS 204
SG G HV + L EG A G + +G ++R VG +KSRS G GL
Sbjct: 12 SGGGGGACHVSNVL-EGEAKKPGADSKDARKDGSADRGVSRVGSDKSRSHG-GLDSKKDV 69
Query: 203 RSNRDGH 183
RDG+
Sbjct: 70 VIQRDGN 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,321,436
Number of Sequences: 37544
Number of extensions: 347800
Number of successful extensions: 1378
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -