Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n21r
(532 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 239 6e-64
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 231 3e-61
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam... 34 0.069
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ... 29 2.6
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 28 4.5
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 4.5
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 4.5
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 7.9
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 239 bits (586), Expect = 6e-64
Identities = 110/143 (76%), Positives = 125/143 (87%)
Frame = -2
Query: 483 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 304
MGK RG+ RK R QRWADK++KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 303 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 124
QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 123 KVVKVANVSLLALYKEKKERPRS 55
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 231 bits (564), Expect = 3e-61
Identities = 108/143 (75%), Positives = 122/143 (85%)
Frame = -2
Query: 483 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 304
MGK RG+ RK R QRWADK +KK++ G +WK PF +SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59
Query: 303 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 124
QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 123 KVVKVANVSLLALYKEKKERPRS 55
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
protein
Length = 125
Score = 33.9 bits (74), Expect = 0.069
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = -2
Query: 306 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 127
K+PNSA RK +V+L N + A +P +G ++ +E+ VL+ G GR V D PGV+
Sbjct: 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94
Query: 126 FKVVK 112
++
Sbjct: 95 SHCIR 99
>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 289
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 120 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 4
VV++ +SL Y KKE+ + +++ D+L A+F+
Sbjct: 80 VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 167 PNPATSTSSFSSMWFRQP-SRGTNAVTFFPFLMSCTR 274
P PA+ST SFSS P S ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 420 WADKEFKKAHMGTKWKANPFGGASHAKG 337
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 420 WADKEFKKAHMGTKWKANPFGGASHAKG 337
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 258 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 97
K KK + VP+ + E D+V GF K V D+P + +VV + NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,776,762
Number of Sequences: 28952
Number of extensions: 279768
Number of successful extensions: 727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -