Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n20r
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   194   9e-51
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   192   3e-50
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.7  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   9.7  

>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  194 bits (473), Expect = 9e-51
 Identities = 100/198 (50%), Positives = 119/198 (60%)
 Frame = -2

Query: 630 MGAYRYIQEXYRKKLSDVMRFLLRVRVWQXRQLXXMHRAXRPTRPDKARRLGYRAKQXXX 451
           MGAY+Y++E  +KK SDV  FL RVR W+ RQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 450 XXXXXXXXXXXXXXXXXGXTYGKPKSHGVNQLKXTRNLQSIXXXXXXXXXXXXXXLSSYW 271
                            G TYGKP   GVN LK  R+ +                L+SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 270 VAQDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHREMXXXXXXXXXXXGLGKGHRY 91
           V QD++YK+FEVILVDPSHKAIRRD +INWIVN VHKHRE            G+GKGHRY
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180

Query: 90  SQXKGGSRRAAWLRRNTL 37
           +      + A WLR NTL
Sbjct: 181 N---NSPQHATWLRHNTL 195


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  192 bits (469), Expect = 3e-50
 Identities = 99/198 (50%), Positives = 119/198 (60%)
 Frame = -2

Query: 630 MGAYRYIQEXYRKKLSDVMRFLLRVRVWQXRQLXXMHRAXRPTRPDKARRLGYRAKQXXX 451
           MGAY+Y++E  +KK SDV  FL RVR W+ RQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 450 XXXXXXXXXXXXXXXXXGXTYGKPKSHGVNQLKXTRNLQSIXXXXXXXXXXXXXXLSSYW 271
                            G TYGKP   GVN LK  R+ +                L+SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 270 VAQDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHREMXXXXXXXXXXXGLGKGHRY 91
           V QD++YK+FEVILVDPSHKAIRRD +INWIVN VHKHRE            G+GKGHR+
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180

Query: 90  SQXKGGSRRAAWLRRNTL 37
           +      + A WLR NTL
Sbjct: 181 N---NSPQHATWLRHNTL 195


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 307 SLRWSPCVELLLGCTRFF 254
           SL+  P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 331 GLKVARGLQLVDTMALGLAISGTLSNW 411
           GL VA G Q  DT+ LG+ I   +S++
Sbjct: 93  GLTVALGPQFPDTLVLGMEIRMQVSDY 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,791
Number of Sequences: 5004
Number of extensions: 35337
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)