Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n20r
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...   179   2e-45
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...   177   8e-45
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     28   0.036
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     30   1.4  

>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score =  179 bits (435), Expect = 2e-45
 Identities = 93/199 (46%), Positives = 116/199 (58%), Gaps = 1/199 (0%)
 Frame = -2

Query: 630 MGAYRYIQEXYRKKLSDVMRFLLRVRVWQXRQLXXMHRAXRPTRPDKARRLGYRAKQXXX 451
           MGAY+Y+ E +R+K SDVMRF+ RVR W+ RQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 450 XXXXXXXXXXXXXXXXXGXTYGKPKSHGVNQLKXTRNLQSIXXXXXXXXXXXXXXLSSYW 271
                            G  YGKPK  G+ QLK  RN +S+              L+SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 270 VAQDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHREMXXXXXXXXXXXGL-GKGHR 94
           V +DS+YKYFE+ILVD +H AIR D +INW+   VHKHRE+           GL GKGH 
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180

Query: 93  YSQXKGGSRRAAWLRRNTL 37
           + + +  SRRA W R  T+
Sbjct: 181 HHKAR-PSRRATWKRNQTV 198


>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score =  177 bits (430), Expect = 8e-45
 Identities = 92/198 (46%), Positives = 115/198 (58%), Gaps = 1/198 (0%)
 Frame = -2

Query: 627 GAYRYIQEXYRKKLSDVMRFLLRVRVWQXRQLXXMHRAXRPTRPDKARRLGYRAKQXXXX 448
           GAY+Y+ E +R+K SDVMRF+ RVR W+ RQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166

Query: 447 XXXXXXXXXXXXXXXXGXTYGKPKSHGVNQLKXTRNLQSIXXXXXXXXXXXXXXLSSYWV 268
                           G  YGKPK  G+ QLK  RN +S+              L+SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226

Query: 267 AQDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHREMXXXXXXXXXXXGL-GKGHRY 91
            +DS+YKYFE+ILVD +H AIR D +INW+   VHKHRE+           GL GKGH +
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTH 286

Query: 90  SQXKGGSRRAAWLRRNTL 37
            + +  SRRA W R  T+
Sbjct: 287 HKAR-PSRRATWKRNQTV 303


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 28.3 bits (60), Expect(2) = 0.036
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 243 FEVILVDPSHKAIRRDXK 190
           FE+ILVD +H AIR D K
Sbjct: 299 FEIILVDVAHSAIRDDPK 316



 Score = 26.2 bits (55), Expect(2) = 0.036
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 390 YGKPKSHGVNQLKXTRN 340
           Y KPK  G+ QLK  RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 331 GLKVARGLQLVDTMALGLAISGTLSNWTLAXTTSHTDSE 447
           G +V  G++ V  +ALGL ++GT   W L   T  +D++
Sbjct: 591 GSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,770
Number of Sequences: 37544
Number of extensions: 266318
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)