Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n20r
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             216   2e-56
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)                  30   1.9  
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  216 bits (527), Expect = 2e-56
 Identities = 105/198 (53%), Positives = 125/198 (63%)
 Frame = -2

Query: 630 MGAYRYIQEXYRKKLSDVMRFLLRVRVWQXRQLXXMHRAXRPTRPDKARRLGYRAKQXXX 451
           MGAY+Y++E Y+KK SD++RFLLRVR WQ RQL  +HRA RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60

Query: 450 XXXXXXXXXXXXXXXXXGXTYGKPKSHGVNQLKXTRNLQSIXXXXXXXXXXXXXXLSSYW 271
                            G TYGKP + GVN+LK  R+L+S+              L+SYW
Sbjct: 61  IYRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYW 120

Query: 270 VAQDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHREMXXXXXXXXXXXGLGKGHRY 91
           V QDS YKYFEVI+VDP HKAIRRD +INWI    HKHRE+           G+ KGH Y
Sbjct: 121 VGQDSIYKYFEVIMVDPFHKAIRRDARINWICKPTHKHRELRGLTAAGTKNRGMRKGHNY 180

Query: 90  SQXKGGSRRAAWLRRNTL 37
           ++  G SRRA W R NTL
Sbjct: 181 NKVIGSSRRANWKRHNTL 198


>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
          Length = 574

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 480 VFGLC--PALWAWXRGAYXXTDGTAILSHATKNA*HRSVFSYTTPEYICXHPS 632
           V+ +C   AL A+ +     TDGT I+ +       + VF+ T  E +C HPS
Sbjct: 403 VYDVCLPKALPAYFQCVSASTDGTCIIWNLESFVRSQIVFANTMFEAVCYHPS 455


>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/75 (30%), Positives = 32/75 (42%)
 Frame = +1

Query: 382 LAISGTLSNWTLAXTTSHTDSEYDITLFSTVA*SSGFVRPCGPGSAVHTXQLTXLPYSHT 561
           LA +GT     LA T ++   +Y I  ++        +R        HT  LT   YSHT
Sbjct: 709 LAYTGTYKYGILAYTGTY---KYGILAYTGTYTGYSHIRGLTNTGYSHTRGLTNTGYSHT 765

Query: 562 QQKTHNIAQFFPIXL 606
           +  T+N    F I L
Sbjct: 766 RGLTNNGRTLFSIVL 780


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,936,364
Number of Sequences: 59808
Number of extensions: 314638
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)