Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n20r
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   201   4e-52
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   8.9  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   8.9  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  201 bits (490), Expect = 4e-52
 Identities = 96/197 (48%), Positives = 122/197 (61%)
 Frame = -2

Query: 630 MGAYRYIQEXYRKKLSDVMRFLLRVRVWQXRQLXXMHRAXRPTRPDKARRLGYRAKQXXX 451
           MGAY+Y+QE +RKK SD +R+LLR+R W  RQL  +HR  RPTRP+KARRLGYRAKQ   
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 450 XXXXXXXXXXXXXXXXXGXTYGKPKSHGVNQLKXTRNLQSIXXXXXXXXXXXXXXLSSYW 271
                            G TYGKPK+HGVN+LK  ++ Q++              L+SYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 270 VAQDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHREMXXXXXXXXXXXGLGKGHRY 91
           VA+DS+YK++EV+L+DP HKAIRR+    WI   VHKHRE            GLGKG R+
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRF 180

Query: 90  SQXKGGSRRAAWLRRNT 40
           S  +GGS+   W R+NT
Sbjct: 181 SATRGGSQAKNWKRKNT 197


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 261 DSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHRE 151
           D  Y  F  +L D + K      K++W V AVHK  E
Sbjct: 420 DDEYDKFIALLRDINKKKRDDPSKLSWKVTAVHKRLE 456


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 261 DSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHRE 151
           D  Y  F  +L D + K      K++W V AVHK  E
Sbjct: 420 DDEYDKFIALLRDINKKKRDDPSKLSWKVTAVHKRLE 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,513,972
Number of Sequences: 27780
Number of extensions: 210884
Number of successful extensions: 334
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)