Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n20r
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           182   2e-46
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           181   4e-46
At3g18050.1 68416.m02296 expressed protein                             29   2.7  

>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  182 bits (442), Expect = 2e-46
 Identities = 93/199 (46%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
 Frame = -2

Query: 630 MGAYRYIQEXYRKKLSDVMRFLLRVRVWQXRQLXXMHRAXRPTRPDKARRLGYRAKQXXX 451
           MGAY+Y+ E +RKK SDVMRFL RVR W+ RQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 450 XXXXXXXXXXXXXXXXXGXTYGKPKSHGVNQLKXTRNLQSIXXXXXXXXXXXXXXLSSYW 271
                            G  YGKP + GV QLK  R+ +S+              ++SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 270 VAQDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHREMXXXXXXXXXXXGL-GKGHR 94
           + +DS+YKY+E+ILVDP+H A+R D +INWI N VHKHRE+           GL GKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 93  YSQXKGGSRRAAWLRRNTL 37
             + +  SRRA W + N+L
Sbjct: 181 NHKNR-PSRRATWKKNNSL 198


>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  181 bits (440), Expect = 4e-46
 Identities = 92/199 (46%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
 Frame = -2

Query: 630 MGAYRYIQEXYRKKLSDVMRFLLRVRVWQXRQLXXMHRAXRPTRPDKARRLGYRAKQXXX 451
           MGAY+Y+ E +RKK SDVMRFL RVR W+ RQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 450 XXXXXXXXXXXXXXXXXGXTYGKPKSHGVNQLKXTRNLQSIXXXXXXXXXXXXXXLSSYW 271
                            G  YGKP + GV QLK  R+ +S+              ++SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 270 VAQDSSYKYFEVILVDPSHKAIRRDXKINWIVNAVHKHREMXXXXXXXXXXXGL-GKGHR 94
           + +DS+YKY+E+ILVDP+H A+R D +INWI N VHKHRE+           GL GKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 93  YSQXKGGSRRAAWLRRNTL 37
             + +  SRRA W + N++
Sbjct: 181 NHKNR-PSRRATWKKNNSI 198


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 492 CPALWAWXRGAYXXTDGTAILSHATKNA*HRSVFSYTTPE 611
           CP L AW   AY  T  +  +S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,915,975
Number of Sequences: 28952
Number of extensions: 198170
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)