Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n17r
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0242 + 15765726-15765965,15766703-15766874,15767056-157672... 29 1.3
05_02_0091 + 6519799-6519918,6520521-6520682,6520732-6520836 28 2.9
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474... 28 3.9
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871... 27 5.1
11_06_0511 - 24434007-24436814 27 6.8
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 27 6.8
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 27 9.0
11_01_0437 - 3347960-3349246 27 9.0
01_06_1088 - 34439311-34439987,34440080-34440136,34442790-344429... 27 9.0
>03_03_0242 +
15765726-15765965,15766703-15766874,15767056-15767209,
15767287-15767350,15767533-15767640,15767817-15767942,
15768037-15768269,15768565-15768787
Length = 439
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 249 VDGDGLVFVAFLDQCSCRLELQKFPDLVFGETDKLKE 359
VDG G+ L + C ++++ PD++FGE K K+
Sbjct: 7 VDGSGVPLAVLLKRELCNQKVER-PDMLFGEASKSKK 42
>05_02_0091 + 6519799-6519918,6520521-6520682,6520732-6520836
Length = 128
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 262 PSPSTATVQRRQFLSPVCLSTKPSMV 185
PSPS +F SP+CLST+P+ +
Sbjct: 26 PSPSLPVTDFEEF-SPICLSTQPAFL 50
>02_05_1133 +
34346894-34347121,34347222-34347283,34347373-34347460,
34348005-34348268,34348346-34348586,34348672-34348748,
34348837-34349007,34349084-34349176,34349257-34349406,
34349491-34349577,34349656-34349820,34349900-34350019,
34350244-34350446,34350547-34350696,34350779-34350926,
34351046-34351129,34351207-34351308
Length = 810
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 404 LGKKYTFDREENFDGFLKFVGLPEDQIRKLLQ--FKPTTTLIKEGDKYKTITVDSNGTKE 231
+G + +R +FD + + + K++ + P T + +++ I + G +
Sbjct: 470 VGSNGSKNRYFDFDKLAEITSIVTRNLNKIIDTNYYPVETAKRSNMRHRPIGIGVQGLAD 529
Query: 230 TVFESGVPFDET 195
T G+PFD T
Sbjct: 530 TFILLGMPFDST 541
>10_08_0854 +
21086253-21086258,21086320-21086480,21087065-21087175,
21087275-21087329,21087796-21087963,21088232-21090082,
21090355-21090690
Length = 895
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 442 IYVSTWATQPCLSWVKNTHSIEKKTSMGSLSLSVSPKTRSG 320
IY + W L+W+ HS K+TS ++ +PK R G
Sbjct: 543 IYANIWKAGNELNWIYTFHSTGKRTS----TVGKTPKDRRG 579
>11_06_0511 - 24434007-24436814
Length = 935
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 236 KETVFESGVPFDETIDGVLTIKTTYTVDGNTVTHVVEN 123
KE + ES D T DG L++ Y G+ TH+V++
Sbjct: 201 KEELIESLKSKDMTKDGALSVIAVYGQPGSGKTHLVKD 238
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 27.1 bits (57), Expect = 6.8
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -1
Query: 335 EDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTV 156
E+ KLLQ K T +++ K + + D+ + +FE G D+ D L ++
Sbjct: 400 ENNDAKLLQLKEKATKLEKAQKNQRVYGDNPSQEICMFEEGNIMDQQ-DNSLMNTQSHVH 458
Query: 155 DGNTVTHVVENP--NGTATFKREYGDTELKVTISADKWDG 42
D N + T + + + + K+T A+K G
Sbjct: 459 DENLQPPTKHSTVYKNTQSLGQNHSGKQRKITSCANKRKG 498
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 427 WA-TQPCLSWVKNTHSIEKKTSMG 359
WA T PCLSW NT K ++G
Sbjct: 278 WASTIPCLSWQYNTEKTPKVLAVG 301
>11_01_0437 - 3347960-3349246
Length = 428
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 229 VSFVPLLSTVMVLYLSPSLINVVVGLNCKSFRIWSS 336
++F+PLLS++ +L L P+L + + G ++SS
Sbjct: 111 LAFLPLLSSLYLLRLPPALPSSLSGFEAVLLAVYSS 146
>01_06_1088 -
34439311-34439987,34440080-34440136,34442790-34442919,
34443499-34443740,34443857-34444008,34444381-34444461,
34444547-34444612,34444692-34444763,34444843-34444984,
34445146-34445645,34446625-34447192,34447248-34447257
Length = 898
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 170 FLSSIHHRWFRRKAHR 217
FLSS+ H WF RK R
Sbjct: 307 FLSSMFHNWFLRKGRR 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,341,995
Number of Sequences: 37544
Number of extensions: 260709
Number of successful extensions: 742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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