Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n17r
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52838| Best HMM Match : DUF1280 (HMM E-Value=2)                     33   0.14 
SB_6778| Best HMM Match : fn3 (HMM E-Value=0.13)                       33   0.14 
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    33   0.14 
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_2147| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.14 
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)                 30   0.75 
SB_59573| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.99 
SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_2119| Best HMM Match : DUF11 (HMM E-Value=0.84)                     28   3.0  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        28   4.0  
SB_38614| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)                    27   7.0  
SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)                  27   9.2  
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         27   9.2  

>SB_52838| Best HMM Match : DUF1280 (HMM E-Value=2)
          Length = 280

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 275 DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 141
           D +K + V ++G  E V E    FD+T  G  + K    VDGN V
Sbjct: 98  DNFKQVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAV 142


>SB_6778| Best HMM Match : fn3 (HMM E-Value=0.13)
          Length = 464

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -1

Query: 266 KTITVDSNGTKETVFESGV-PFDETIDGVLTIKTTYTVDGNTVTHVV 129
           K  ++D   + +T++ SGV P+D T +  LTI+ T  +  +T+T +V
Sbjct: 20  KDHSLDRYDSTQTIYVSGVKPYDRTFNHSLTIQQTSIITASTLTRLV 66


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 209  PFDETIDGVLTIKTTYTVDGNTVTHVVENPNGTATFKREYGD-TELKVTISADKWDGVAY 33
            PF+  I   L     YT++ + V   V    G AT+K +Y +  E  +TI A   DG + 
Sbjct: 1558 PFELFISSTLEKAINYTIETSGVNTTVVTSTGKATWKHKYLEPLEGNITIIASA-DGESI 1616

Query: 32   RYY 24
            R+Y
Sbjct: 1617 RFY 1619


>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 275 DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 141
           D +K + V ++G  E V E    FD+T  G  + K    VDGN V
Sbjct: 29  DNFKQVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAV 73


>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 275 DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 141
           D +K + V ++G  E V E    FD+T  G  + K    VDGN V
Sbjct: 304 DNFKQVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAV 348


>SB_2147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 275 DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 141
           D +K + V ++G  E V E    FD+T  G  + K    VDGN V
Sbjct: 73  DNFKQVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAV 117


>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
          Length = 1167

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 284 KEGDKYKTITVD--SNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 141
           K  ++ K ITV   ++G  E V E    FD+T  G  + K    VDGN V
Sbjct: 370 KAAEQMKLITVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAV 419


>SB_59573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 275 DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 141
           D +K + V ++G  E V E    FD+T  G    K    VDG+ V
Sbjct: 57  DNFKQVHVVADGFTELVTEYKAVFDDTAVGCFPGKVNLKVDGDAV 101


>SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1036

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 404 LGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFK 303
           L +KY F+R E F+  ++ +GL  D +  L QF+
Sbjct: 746 LSQKYPFERAEKFNKGIRKLGLSPDGLTYLDQFR 779


>SB_2119| Best HMM Match : DUF11 (HMM E-Value=0.84)
          Length = 273

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
 Frame = -1

Query: 299 TTTLIKEG-DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTY---TVDGNTVTHV 132
           T+T+  +G   Y    +D NG  + +    V  +  I   L   T      V    + H+
Sbjct: 66  TSTISNQGAGTYSCTIIDQNGCTQQLDNLIVDENPAITVTLNFITNLLDPAVSNGAINHI 125

Query: 131 VENPNGTATFKREYGDTELKVT 66
           V    G+ T+    G+T L  T
Sbjct: 126 VSGGTGSYTYAWSNGNTSLNAT 147


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
 Frame = +1

Query: 184 TPSMVSSKGTPDSKTVSFV-PLLSTVMVLYLSPSLI--NVVVGLNCKSFRIWSSGRPTNL 354
           +PS VS+  T DS +VSF   LLST ++  +S S++  N  V     + R+ +S   ++ 
Sbjct: 529 SPSYVSNMTTLDS-SVSFTRSLLSTTLIPSISTSILPYNTTVIATPNTTRLVTSTISSST 587

Query: 355 RNPSKFSSLSNV 390
            N S  S+ S++
Sbjct: 588 VNVSAISTTSSI 599


>SB_38614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 227 VFESGV-PFDETIDGVLTIKTTYTVDGNTVTHVV 129
           ++ SGV P+D T +  LTI+ T  +  +T+T +V
Sbjct: 1   IYVSGVKPYDRTFNHSLTIQQTSIITASTLTRLV 34


>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4634

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 341  LPEDQIRKLLQFKPTTTLIKEGDKYKTITVD-SNGTKETV 225
            LP D    + +F P+T   +EG+K  ++T+  S GTK  +
Sbjct: 1111 LPSDDPYGVFKFTPSTLTTQEGNKTVSLTITRSLGTKGAI 1150


>SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)
          Length = 368

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 229 VSFVPLLSTVMVLYLSPSLINVVVGLNCKSFRIW 330
           +S  P+L +V  L LSP+L +V + L C   R+W
Sbjct: 1   LSVAPVLRSVQTLSLSPALRSVALRLVC---RVW 31


>SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)
          Length = 585

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 418 QPCLSWVKNTHSIEKKTSM 362
           QPC +W    H IEK T++
Sbjct: 228 QPCHNWYPTVHKIEKVTNL 246


>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2578

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 418  QPCLSWVKNTHSIEKKTSM 362
            QPC +W    H IEK T++
Sbjct: 1408 QPCHNWYPTVHKIEKVTNL 1426


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 24/68 (35%), Positives = 29/68 (42%)
 Frame = -2

Query: 397 KNTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTATVQRRQFLS 218
           K T   +  TS    S S S +T S    SSS Q   S   T T PS  T+T   +   S
Sbjct: 661 KVTSPQQTSTSPQETSTSSSKQT-STQQTSSSQQTSTSPPQTTTSPSQQTSTSPPQTTTS 719

Query: 217 PVCLSTKP 194
           P   +T P
Sbjct: 720 PSQQTTSP 727


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 233 ETVFESGVPFDETIDGVLTIKTTYTVDG 150
           E +F  GVPF+E++D  + + T  +  G
Sbjct: 219 ELIFPQGVPFEESVDQEVDVDTPLSQRG 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,654,498
Number of Sequences: 59808
Number of extensions: 317080
Number of successful extensions: 1116
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)