Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n17r
(443 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding... 42 2e-04
AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding... 38 0.004
Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical pr... 30 0.87
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ... 30 0.87
AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding... 30 0.87
AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding... 30 0.87
U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and en... 29 1.1
AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type tra... 29 1.1
Z68320-3|CAA92707.3| 477|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr... 29 2.0
AL110482-4|CAB60337.1| 371|Caenorhabditis elegans Hypothetical ... 28 3.5
AF000262-7|AAN60523.1| 544|Caenorhabditis elegans Hypothetical ... 28 3.5
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 27 4.6
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 27 4.6
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 27 4.6
AF025471-10|AAB71059.1| 326|Caenorhabditis elegans Hypothetical... 27 8.1
>AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding
protein protein 5 protein.
Length = 136
Score = 41.9 bits (94), Expect = 2e-04
Identities = 27/92 (29%), Positives = 42/92 (45%)
Frame = -1
Query: 407 FLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKET 228
F+G+ + ENF+ +LK VG+ + KPT + G+K+ + +
Sbjct: 6 FVGR-WKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTTL 64
Query: 227 VFESGVPFDETIDGVLTIKTTYTVDGNTVTHV 132
F GV FDET K+T T++ V HV
Sbjct: 65 EFTLGVEFDETTPDGRQFKSTITIEDGKVVHV 96
>AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding
protein protein 6 protein.
Length = 135
Score = 37.5 bits (83), Expect = 0.004
Identities = 23/95 (24%), Positives = 41/95 (43%)
Frame = -1
Query: 416 TMSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGT 237
+ F+G+ + ENF+ ++K VG+ + KPT + EGD + + +
Sbjct: 2 SQEFVGR-WKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKN 60
Query: 236 KETVFESGVPFDETIDGVLTIKTTYTVDGNTVTHV 132
F+ G FDET T+K+ + H+
Sbjct: 61 TTLSFKLGQEFDETTPDGRTVKSVVNFENGKFIHI 95
>Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical
protein T22G5.2 protein.
Length = 137
Score = 29.9 bits (64), Expect = 0.87
Identities = 19/91 (20%), Positives = 39/91 (42%)
Frame = -1
Query: 407 FLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKET 228
F+G+ + + ENFD ++K +G+ + KP + +G+ + + +
Sbjct: 7 FIGR-WKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTKL 65
Query: 227 VFESGVPFDETIDGVLTIKTTYTVDGNTVTH 135
F+ G F E T + +T + +TH
Sbjct: 66 SFKLGEEFVENSPDDRTYNSLFTFENGKLTH 96
>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
protein C26G2.1 protein.
Length = 1270
Score = 29.9 bits (64), Expect = 0.87
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -1
Query: 320 KLLQFKPTTTLIKEGDKYK-TITVDSNGTKE--TVFESGVPFDETIDGV 183
K+L P T ++ EGD +K +TV N ++GVPFD TI V
Sbjct: 691 KMLVNDPVTVVMSEGDSFKENLTVRGNPAISLWQWRKNGVPFDHTIGRV 739
>AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding
protein protein 9,isoform b protein.
Length = 137
Score = 29.9 bits (64), Expect = 0.87
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = -1
Query: 395 KYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETV--- 225
K+ F ENFD +LK VG+ + KP GD++ T++SN T +
Sbjct: 10 KWNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEW---TMNSNSTFKNYTLK 66
Query: 224 FESGVPFDE-TIDGVLTIKTTYTVDGNTVTHVVENPNG 114
++ G DE T DG + + ++++ + + + G
Sbjct: 67 WKLGTASDEKTADG-RDVSSVFSIENDHLVQIETGKGG 103
>AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding
protein protein 9,isoform a protein.
Length = 152
Score = 29.9 bits (64), Expect = 0.87
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = -1
Query: 395 KYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETV--- 225
K+ F ENFD +LK VG+ + KP GD++ T++SN T +
Sbjct: 25 KWNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEW---TMNSNSTFKNYTLK 81
Query: 224 FESGVPFDE-TIDGVLTIKTTYTVDGNTVTHVVENPNG 114
++ G DE T DG + + ++++ + + + G
Sbjct: 82 WKLGTASDEKTADG-RDVSSVFSIENDHLVQIETGKGG 118
>U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and
endoderm determinationprotein 2 protein.
Length = 174
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = -2
Query: 394 NTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTAT 242
NT++ T+M S SL++SP T S N + H S +T SPST+T
Sbjct: 51 NTYASYYPTAMDSSSLNISPTTGSPNSSHFTTFTHFSTPST----SPSTST 97
>AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = -2
Query: 394 NTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTAT 242
NT++ T+M S SL++SP T S N + H S +T SPST+T
Sbjct: 51 NTYASYYPTAMDSSSLNISPTTGSPNSSHFTTFTHFSTPST----SPSTST 97
>Z68320-3|CAA92707.3| 477|Caenorhabditis elegans Hypothetical
protein W07A12.6 protein.
Length = 477
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 181 NTPSMVSSKGTPDSKTVSFVPLLS-TVMVLYLSPSLINVVVGLNCK-SFRIWSSGRPTNL 354
NT S ++S PD+ TV+ PL++ T +V+ S + N++ L+ K S + +GR + L
Sbjct: 8 NTTSCLTSTLLPDTVTVAATPLIAWTALVILGSITSNNILSALSLKRSIKELLTGRSSKL 67
>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
protein C08B11.3 protein.
Length = 1244
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = -1
Query: 416 TMSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGT 237
TM+ +GK++ + NF F G+P D + L + I E D++ T ++
Sbjct: 229 TMADMGKEWKRTTKHNFRDFWASSGVPLDMLMTFLDREIEAEYIDEDDQFFTGVSETFNV 288
Query: 236 KET 228
K++
Sbjct: 289 KDS 291
>AL110482-4|CAB60337.1| 371|Caenorhabditis elegans Hypothetical
protein Y39G8B.3 protein.
Length = 371
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 306 ELQKFPDLVFGETDKLKEPIEVFFSIECVF 395
EL KFP ++ ++ + + V+F+I CVF
Sbjct: 25 ELLKFPSIILLVSEFMMFVVTVYFAIRCVF 54
>AF000262-7|AAN60523.1| 544|Caenorhabditis elegans Hypothetical
protein C48E7.2 protein.
Length = 544
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 173 KTTYTVDGNTVTHVVENPNGTATFKREYG 87
+TTY D + + HV+ +P K YG
Sbjct: 75 RTTYVADSDQIQHVISSPRACLIAKTLYG 103
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 81 GVTVFPFECCCAIGILYNMSYGVSIN 158
G T+F CCC+I +L NM + N
Sbjct: 642 GKTIFGSYCCCSIIVLLNMLIAMMSN 667
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 81 GVTVFPFECCCAIGILYNMSYGVSIN 158
G T+F CCC+I +L NM + N
Sbjct: 642 GKTIFGSYCCCSIIVLLNMLIAMMSN 667
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 81 GVTVFPFECCCAIGILYNMSYGVSIN 158
G T+F CCC+I +L NM + N
Sbjct: 642 GKTIFGSYCCCSIIVLLNMLIAMMSN 667
>AF025471-10|AAB71059.1| 326|Caenorhabditis elegans Hypothetical
protein R52.1 protein.
Length = 326
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -1
Query: 353 KFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETVFESGVPFDETIDGVLTI 174
KF+ LL KP + + D T +VD E ++ ++TIDG+LT+
Sbjct: 165 KFLASHSTYFNALLLGKPEMSEVTIQD---TSSVDFQNLLEVLYGEPAIDEDTIDGILTL 221
Query: 173 KTTYTV 156
+T+
Sbjct: 222 AHKFTM 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,858,354
Number of Sequences: 27780
Number of extensions: 241522
Number of successful extensions: 943
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -