Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n17f
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 30 0.16
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 29 0.28
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 28 0.86
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 26 2.6
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 6.1
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 25 6.1
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 6.1
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 8.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.0
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 8.0
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 8.0
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 30.3 bits (65), Expect = 0.16
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +1
Query: 145 TTTLIKEGDKYKTITVD----SNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTVTHV 312
T T G + T+TV S GT V ++ T ++T+ T YT G + V
Sbjct: 1063 TVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYT--GTETSTV 1120
Query: 313 VENPNGTAT 339
P GTAT
Sbjct: 1121 TVTPTGTAT 1129
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 29.5 bits (63), Expect = 0.28
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -3
Query: 158 INVVVGLNCKSFRIWSSGRPTNLRNPSK 75
+N + GLN KS+R+ +S P+NL NP++
Sbjct: 1369 VNTIGGLNPKSYRLITS--PSNLTNPTR 1394
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.9 bits (59), Expect = 0.86
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 31 MSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQF--KPTTTLIKEGDKYK-TITVDSN 201
+S G + + + ++G+PEDQ RK F +++L+K+ ++K D
Sbjct: 985 LSIAGNSSLWQARKGLASGISYLGIPEDQKRKTFSFDTSKSSSLLKKLYRFKHDPNPDVA 1044
Query: 202 GTKETVFESGVPFD 243
T ++++ VP D
Sbjct: 1045 KTMGEIWDTLVPSD 1058
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 2.6
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Frame = +1
Query: 145 TTTLIKEGDKYKTITVDSNGTKETVFE-----SGVPFDETIDGVLTIKTTYTVDGNTVT- 306
TTT+ +Y TI +++GT E G T G + TT +V+
Sbjct: 222 TTTIYSGDQEYTTILAEASGTVPGTVEVIEPAVGTVTTTTYSGSVEYTTTLVPASGSVSG 281
Query: 307 --HVVENPNGTATFKREYGDTELKVTISA 387
VVE GT T + G T+ A
Sbjct: 282 TVEVVEPAVGTVTTTLQSGSQAFTTTVPA 310
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 6.1
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Frame = +1
Query: 253 DGVLTIKTTYTVDGNTVTHVVENPNGTATFKREYGDTELKV---TISADKWDGVAYRYYK 423
D LTI TVD V P GT + D E+K TI W G R +
Sbjct: 8 DETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGNTIKFIVWHG--SRKHN 65
Query: 424 V*INSIY 444
I S+Y
Sbjct: 66 ACIRSVY 72
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -3
Query: 170 SPSLINVVVGLNCKSFRIWSSGRPTNLRNPSKFSSLSNVYFLPKKDMV 27
S SL+ ++G+N F +W + R ++L + ++ N F+ M+
Sbjct: 76 SRSLVLSIIGINVGVFALWRAPRFSHLNRFLQKYAVMNPIFINMPSMI 123
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 6.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 5 YVSTWATQPCLSWVKNTHSIEKKTSMGSLSLSVSPKTRSGNFCSSS 142
Y S A+ P S + S+ ++ S S S +RSG+ SSS
Sbjct: 503 YSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSS 548
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 24.6 bits (51), Expect = 8.0
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Frame = +1
Query: 148 TTLIKEGDKYKTITVDS-NGTKETVFESGVPFDETI-----DGVLTIKTTYTVDGNTV-- 303
TT + G T T+DS NGT E P T+ G TT +TV
Sbjct: 113 TTTLYSGSLEFTTTLDSANGTTPATIEVVEPAAGTVTTTIYSGTTPFNTTLASATDTVPG 172
Query: 304 -THVVENPNGTATFKREYGDTELKVTIS 384
VVE GT T G E T++
Sbjct: 173 TVEVVEPEAGTVTTTVYSGTQEYTTTLA 200
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 8.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 62 IEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTAT 202
++ KTS S L P+T S ++ H + + P PST+T
Sbjct: 812 VQPKTSQASSILPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTST 858
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 8.0
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 50 NTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTA---TVQRRQF 220
++ S +S S S+ ++ T S + SSS S ++++RPS S++ T+ F
Sbjct: 193 SSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSS---SSSSSSSRPSSSSSFITTMSSSTF 249
Query: 221 LSPVCLSTKPS 253
+S V ++ S
Sbjct: 250 ISTVTVTPSSS 260
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 62 IEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH 154
++KK + +LSLS SP S F SS H
Sbjct: 650 LDKKKMLETLSLSDSPNPESITFISSKFVDH 680
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 8.0
Identities = 21/91 (23%), Positives = 33/91 (36%)
Frame = +1
Query: 148 TTLIKEGDKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTVTHVVENPN 327
TT+ +G+ TIT+ N V S T +++ +T + + T +
Sbjct: 48 TTIYSQGEYETTITIPPNSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTSSQRHNT 107
Query: 328 GTATFKREYGDTELKVTISADKWDGVAYRYY 420
T TF D V D V Y Y+
Sbjct: 108 KTITFFSGTSD-YTSVYYDTTGTDDVVYEYH 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,526
Number of Sequences: 5004
Number of extensions: 45811
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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