Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n17f
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0242 + 15765726-15765965,15766703-15766874,15767056-157672...    29   1.5  
05_02_0091 + 6519799-6519918,6520521-6520682,6520732-6520836           28   3.5  
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474...    28   4.6  
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871...    27   6.0  
11_06_0511 - 24434007-24436814                                         27   8.0  
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548...    27   8.0  

>03_03_0242 +
           15765726-15765965,15766703-15766874,15767056-15767209,
           15767287-15767350,15767533-15767640,15767817-15767942,
           15768037-15768269,15768565-15768787
          Length = 439

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 195 VDGDGLVFVAFLDQCSCRLELQKFPDLVFGETDKLKE 85
           VDG G+     L +  C  ++++ PD++FGE  K K+
Sbjct: 7   VDGSGVPLAVLLKRELCNQKVER-PDMLFGEASKSKK 42


>05_02_0091 + 6519799-6519918,6520521-6520682,6520732-6520836
          Length = 128

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 182 PSPSTATVQRRQFLSPVCLSTKPSMV 259
           PSPS       +F SP+CLST+P+ +
Sbjct: 26  PSPSLPVTDFEEF-SPICLSTQPAFL 50


>02_05_1133 +
           34346894-34347121,34347222-34347283,34347373-34347460,
           34348005-34348268,34348346-34348586,34348672-34348748,
           34348837-34349007,34349084-34349176,34349257-34349406,
           34349491-34349577,34349656-34349820,34349900-34350019,
           34350244-34350446,34350547-34350696,34350779-34350926,
           34351046-34351129,34351207-34351308
          Length = 810

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 40  LGKKYTFDREENFDGFLKFVGLPEDQIRKLLQ--FKPTTTLIKEGDKYKTITVDSNGTKE 213
           +G   + +R  +FD   +   +    + K++   + P  T  +   +++ I +   G  +
Sbjct: 470 VGSNGSKNRYFDFDKLAEITSIVTRNLNKIIDTNYYPVETAKRSNMRHRPIGIGVQGLAD 529

Query: 214 TVFESGVPFDET 249
           T    G+PFD T
Sbjct: 530 TFILLGMPFDST 541


>10_08_0854 +
           21086253-21086258,21086320-21086480,21087065-21087175,
           21087275-21087329,21087796-21087963,21088232-21090082,
           21090355-21090690
          Length = 895

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 2   IYVSTWATQPCLSWVKNTHSIEKKTSMGSLSLSVSPKTRSG 124
           IY + W     L+W+   HS  K+TS    ++  +PK R G
Sbjct: 543 IYANIWKAGNELNWIYTFHSTGKRTS----TVGKTPKDRRG 579


>11_06_0511 - 24434007-24436814
          Length = 935

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 208 KETVFESGVPFDETIDGVLTIKTTYTVDGNTVTHVVEN 321
           KE + ES    D T DG L++   Y   G+  TH+V++
Sbjct: 201 KEELIESLKSKDMTKDGALSVIAVYGQPGSGKTHLVKD 238


>08_02_0431 +
           17053928-17054189,17054296-17054564,17054661-17054864,
           17054974-17055066,17055160-17055255,17055339-17055683,
           17055935-17056018,17056106-17056171,17056268-17056333,
           17056436-17056501,17056635-17056700,17056798-17056863,
           17056981-17057028,17057107-17057169,17057255-17057320,
           17057483-17057542,17057888-17057935,17058019-17058255,
           17058346-17058366
          Length = 741

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = +1

Query: 109 EDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTV 288
           E+   KLLQ K   T +++  K + +  D+   +  +FE G   D+  D  L    ++  
Sbjct: 400 ENNDAKLLQLKEKATKLEKAQKNQRVYGDNPSQEICMFEEGNIMDQQ-DNSLMNTQSHVH 458

Query: 289 DGNTVTHVVENP--NGTATFKREYGDTELKVTISADKWDG 402
           D N       +     T +  + +   + K+T  A+K  G
Sbjct: 459 DENLQPPTKHSTVYKNTQSLGQNHSGKQRKITSCANKRKG 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,121,710
Number of Sequences: 37544
Number of extensions: 276615
Number of successful extensions: 749
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)