Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n17f
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52838| Best HMM Match : DUF1280 (HMM E-Value=2) 33 0.16
SB_6778| Best HMM Match : fn3 (HMM E-Value=0.13) 33 0.16
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 33 0.16
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_2147| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29) 30 0.88
SB_59573| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_2119| Best HMM Match : DUF11 (HMM E-Value=0.84) 28 3.6
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 4.7
SB_38614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4) 27 8.2
>SB_52838| Best HMM Match : DUF1280 (HMM E-Value=2)
Length = 280
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 169 DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 303
D +K + V ++G E V E FD+T G + K VDGN V
Sbjct: 98 DNFKQVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAV 142
>SB_6778| Best HMM Match : fn3 (HMM E-Value=0.13)
Length = 464
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 178 KTITVDSNGTKETVFESGV-PFDETIDGVLTIKTTYTVDGNTVTHVV 315
K ++D + +T++ SGV P+D T + LTI+ T + +T+T +V
Sbjct: 20 KDHSLDRYDSTQTIYVSGVKPYDRTFNHSLTIQQTSIITASTLTRLV 66
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 32.7 bits (71), Expect = 0.16
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 235 PFDETIDGVLTIKTTYTVDGNTVTHVVENPNGTATFKREYGD-TELKVTISADKWDGVAY 411
PF+ I L YT++ + V V G AT+K +Y + E +TI A DG +
Sbjct: 1558 PFELFISSTLEKAINYTIETSGVNTTVVTSTGKATWKHKYLEPLEGNITIIASA-DGESI 1616
Query: 412 RYY 420
R+Y
Sbjct: 1617 RFY 1619
>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 169 DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 303
D +K + V ++G E V E FD+T G + K VDGN V
Sbjct: 29 DNFKQVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAV 73
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 169 DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 303
D +K + V ++G E V E FD+T G + K VDGN V
Sbjct: 304 DNFKQVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAV 348
>SB_2147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 169 DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 303
D +K + V ++G E V E FD+T G + K VDGN V
Sbjct: 73 DNFKQVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAV 117
>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
Length = 1167
Score = 30.3 bits (65), Expect = 0.88
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 160 KEGDKYKTITVD--SNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 303
K ++ K ITV ++G E V E FD+T G + K VDGN V
Sbjct: 370 KAAEQMKLITVHVVADGFTELVTEYKAVFDDTAVGCFSGKVNLKVDGNAV 419
>SB_59573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 169 DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTV 303
D +K + V ++G E V E FD+T G K VDG+ V
Sbjct: 57 DNFKQVHVVADGFTELVTEYKAVFDDTAVGCFPGKVNLKVDGDAV 101
>SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1036
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 40 LGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFK 141
L +KY F+R E F+ ++ +GL D + L QF+
Sbjct: 746 LSQKYPFERAEKFNKGIRKLGLSPDGLTYLDQFR 779
>SB_2119| Best HMM Match : DUF11 (HMM E-Value=0.84)
Length = 273
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Frame = +1
Query: 145 TTTLIKEG-DKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTY---TVDGNTVTHV 312
T+T+ +G Y +D NG + + V + I L T V + H+
Sbjct: 66 TSTISNQGAGTYSCTIIDQNGCTQQLDNLIVDENPAITVTLNFITNLLDPAVSNGAINHI 125
Query: 313 VENPNGTATFKREYGDTELKVT 378
V G+ T+ G+T L T
Sbjct: 126 VSGGTGSYTYAWSNGNTSLNAT 147
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.9 bits (59), Expect = 4.7
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = -3
Query: 260 TPSMVSSKGTPDSKTVSFV-PLLSTVMVLYLSPSLI--NVVVGLNCKSFRIWSSGRPTNL 90
+PS VS+ T DS +VSF LLST ++ +S S++ N V + R+ +S ++
Sbjct: 529 SPSYVSNMTTLDS-SVSFTRSLLSTTLIPSISTSILPYNTTVIATPNTTRLVTSTISSST 587
Query: 89 RNPSKFSSLSNV 54
N S S+ S++
Sbjct: 588 VNVSAISTTSSI 599
>SB_38614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 217 VFESGV-PFDETIDGVLTIKTTYTVDGNTVTHVV 315
++ SGV P+D T + LTI+ T + +T+T +V
Sbjct: 1 IYVSGVKPYDRTFNHSLTIQQTSIITASTLTRLV 34
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 103 LPEDQIRKLLQFKPTTTLIKEGDKYKTITVD-SNGTKETV 219
LP D + +F P+T +EG+K ++T+ S GTK +
Sbjct: 1111 LPSDDPYGVFKFTPSTLTTQEGNKTVSLTITRSLGTKGAI 1150
>SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)
Length = 368
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 215 VSFVPLLSTVMVLYLSPSLINVVVGLNCKSFRIW 114
+S P+L +V L LSP+L +V + L C R+W
Sbjct: 1 LSVAPVLRSVQTLSLSPALRSVALRLVC---RVW 31
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,016
Number of Sequences: 59808
Number of extensions: 338399
Number of successful extensions: 1142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -