Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n17f
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    42   2e-04
AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    38   0.005
Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    30   1.0  
AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding...    30   1.0  
AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding...    30   1.0  
U00044-5|AAK93857.1|  174|Caenorhabditis elegans Mesoderm and en...    29   1.4  
AF302238-1|AAG21386.1|  174|Caenorhabditis elegans GATA-type tra...    29   1.4  
Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF000262-7|AAN60523.1|  544|Caenorhabditis elegans Hypothetical ...    28   4.1  
AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous...    27   5.5  
AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transien...    27   5.5  
AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transien...    27   5.5  
AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical...    27   9.5  

>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 27/92 (29%), Positives = 42/92 (45%)
 Frame = +1

Query: 37  FLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKET 216
           F+G+ +     ENF+ +LK VG+     +     KPT  +   G+K+    + +      
Sbjct: 6   FVGR-WKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTTL 64

Query: 217 VFESGVPFDETIDGVLTIKTTYTVDGNTVTHV 312
            F  GV FDET       K+T T++   V HV
Sbjct: 65  EFTLGVEFDETTPDGRQFKSTITIEDGKVVHV 96


>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 23/95 (24%), Positives = 41/95 (43%)
 Frame = +1

Query: 28  TMSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGT 207
           +  F+G+ +     ENF+ ++K VG+     +     KPT  +  EGD + +    +   
Sbjct: 2   SQEFVGR-WKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKN 60

Query: 208 KETVFESGVPFDETIDGVLTIKTTYTVDGNTVTHV 312
               F+ G  FDET     T+K+    +     H+
Sbjct: 61  TTLSFKLGQEFDETTPDGRTVKSVVNFENGKFIHI 95


>Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.2 protein.
          Length = 137

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 19/91 (20%), Positives = 39/91 (42%)
 Frame = +1

Query: 37  FLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKET 216
           F+G+ +   + ENFD ++K +G+     +     KP   +  +G+ +      +    + 
Sbjct: 7   FIGR-WKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTKL 65

Query: 217 VFESGVPFDETIDGVLTIKTTYTVDGNTVTH 309
            F+ G  F E      T  + +T +   +TH
Sbjct: 66  SFKLGEEFVENSPDDRTYNSLFTFENGKLTH 96


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 124 KLLQFKPTTTLIKEGDKYK-TITVDSNGTKE--TVFESGVPFDETIDGV 261
           K+L   P T ++ EGD +K  +TV  N         ++GVPFD TI  V
Sbjct: 691 KMLVNDPVTVVMSEGDSFKENLTVRGNPAISLWQWRKNGVPFDHTIGRV 739


>AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform b protein.
          Length = 137

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
 Frame = +1

Query: 49  KYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETV--- 219
           K+ F   ENFD +LK VG+         + KP       GD++   T++SN T +     
Sbjct: 10  KWNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEW---TMNSNSTFKNYTLK 66

Query: 220 FESGVPFDE-TIDGVLTIKTTYTVDGNTVTHVVENPNG 330
           ++ G   DE T DG   + + ++++ + +  +     G
Sbjct: 67  WKLGTASDEKTADG-RDVSSVFSIENDHLVQIETGKGG 103


>AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform a protein.
          Length = 152

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
 Frame = +1

Query: 49  KYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETV--- 219
           K+ F   ENFD +LK VG+         + KP       GD++   T++SN T +     
Sbjct: 25  KWNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEW---TMNSNSTFKNYTLK 81

Query: 220 FESGVPFDE-TIDGVLTIKTTYTVDGNTVTHVVENPNG 330
           ++ G   DE T DG   + + ++++ + +  +     G
Sbjct: 82  WKLGTASDEKTADG-RDVSSVFSIENDHLVQIETGKGG 118


>U00044-5|AAK93857.1|  174|Caenorhabditis elegans Mesoderm and
           endoderm determinationprotein 2 protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +2

Query: 50  NTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTAT 202
           NT++    T+M S SL++SP T S N    +   H S  +T    SPST+T
Sbjct: 51  NTYASYYPTAMDSSSLNISPTTGSPNSSHFTTFTHFSTPST----SPSTST 97


>AF302238-1|AAG21386.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +2

Query: 50  NTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTAT 202
           NT++    T+M S SL++SP T S N    +   H S  +T    SPST+T
Sbjct: 51  NTYASYYPTAMDSSSLNISPTTGSPNSSHFTTFTHFSTPST----SPSTST 97


>Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical
           protein W07A12.6 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = -3

Query: 263 NTPSMVSSKGTPDSKTVSFVPLLS-TVMVLYLSPSLINVVVGLNCK-SFRIWSSGRPTNL 90
           NT S ++S   PD+ TV+  PL++ T +V+  S +  N++  L+ K S +   +GR + L
Sbjct: 8   NTTSCLTSTLLPDTVTVAATPLIAWTALVILGSITSNNILSALSLKRSIKELLTGRSSKL 67


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
           protein C08B11.3 protein.
          Length = 1244

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 28  TMSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGT 207
           TM+ +GK++    + NF  F    G+P D +   L  +     I E D++ T   ++   
Sbjct: 229 TMADMGKEWKRTTKHNFRDFWASSGVPLDMLMTFLDREIEAEYIDEDDQFFTGVSETFNV 288

Query: 208 KET 216
           K++
Sbjct: 289 KDS 291


>AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical
           protein Y39G8B.3 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 138 ELQKFPDLVFGETDKLKEPIEVFFSIECVF 49
           EL KFP ++   ++ +   + V+F+I CVF
Sbjct: 25  ELLKFPSIILLVSEFMMFVVTVYFAIRCVF 54


>AF000262-7|AAN60523.1|  544|Caenorhabditis elegans Hypothetical
           protein C48E7.2 protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 271 KTTYTVDGNTVTHVVENPNGTATFKREYG 357
           +TTY  D + + HV+ +P      K  YG
Sbjct: 75  RTTYVADSDQIQHVISSPRACLIAKTLYG 103


>AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous
           cation channel proteinprotein.
          Length = 816

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 363 GVTVFPFECCCAIGILYNMSYGVSIN 286
           G T+F   CCC+I +L NM   +  N
Sbjct: 642 GKTIFGSYCCCSIIVLLNMLIAMMSN 667


>AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform a
           protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 363 GVTVFPFECCCAIGILYNMSYGVSIN 286
           G T+F   CCC+I +L NM   +  N
Sbjct: 642 GKTIFGSYCCCSIIVLLNMLIAMMSN 667


>AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform b
           protein.
          Length = 886

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 363 GVTVFPFECCCAIGILYNMSYGVSIN 286
           G T+F   CCC+I +L NM   +  N
Sbjct: 642 GKTIFGSYCCCSIIVLLNMLIAMMSN 667


>AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical
           protein R52.1 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 91  KFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETVFESGVPFDETIDGVLTI 270
           KF+         LL  KP  + +   D   T +VD     E ++      ++TIDG+LT+
Sbjct: 165 KFLASHSTYFNALLLGKPEMSEVTIQD---TSSVDFQNLLEVLYGEPAIDEDTIDGILTL 221

Query: 271 KTTYTV 288
              +T+
Sbjct: 222 AHKFTM 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,713,687
Number of Sequences: 27780
Number of extensions: 259558
Number of successful extensions: 980
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)