Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n17f
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    65   4e-13
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    63   1e-12
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    48   4e-08
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          28   0.046
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.25 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   0.99 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.3  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.0  

>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 64.9 bits (151), Expect = 4e-13
 Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
 Frame = +1

Query: 49  KYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETVFES 228
           K+ F  + NF+ F K +G  ++ +  +LQ +P+  L K GD++   +   + T    F+ 
Sbjct: 7   KFQFVSQNNFEEFAKVLG-DQNLVNTVLQPRPSFELSKNGDEWTFTSSSGDNTYTKTFKM 65

Query: 229 GVPFDETIDGV--LTIKTTYTVDGNTV-THVVENPNGTATFKREYGDTELKVTISADKWD 399
            VPF+ET+  +     +T  +++GNT  T    N +   T   E+ D EL V IS +K D
Sbjct: 66  NVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEFSDNELLVHISTNKSD 125

Query: 400 GVAYRYYK 423
             A R YK
Sbjct: 126 VKATRVYK 133


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 63.3 bits (147), Expect = 1e-12
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
 Frame = +1

Query: 37  FLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKET 216
           FLGK+Y     ENFD F+K +G+     +      P   L +    Y   T       E 
Sbjct: 4   FLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTEI 63

Query: 217 VFESGVPF-DETIDGVLTIKTTYTVDGNTVTHVVENPNGTATFKREYGDTELKVTISADK 393
            F+ G  F +ET+DG   +K+  T+DGN +  V +    T T +RE+  TE+K  +  D 
Sbjct: 64  KFKLGEEFEEETVDG-RKVKSVCTLDGNKLIQVQKGEKQT-TIEREFSSTEMKAIMKVD- 120

Query: 394 WDGVAYRYYKV 426
            D +  R YK+
Sbjct: 121 -DIICTRVYKI 130


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 48.4 bits (110), Expect = 4e-08
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = +1

Query: 49  KYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETVFES 228
           K+ F  + NF+ F K +G  ++ +  +LQ +P+  L K GD++   +   + T    F+ 
Sbjct: 5   KFQFVSQNNFEEFAKVLG-DQNLVNTVLQPRPSFELSKNGDEWTFTSSSGDNTYTKTFKM 63

Query: 229 GVPFDETIDGV--LTIKTTYTVDGNT 300
            VPF+ET+  +     +T  +++GNT
Sbjct: 64  NVPFEETLPSLPDRKFQTVTSIEGNT 89


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 28.3 bits (60), Expect = 0.046
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 295 NTVTHVVENPNGTATFKREYGDTELKVTISADKWDGVAYRYY 420
           N  T++V N N ++ + REY D E K+    +  +  AY YY
Sbjct: 196 NIETYIV-NTNYSSKYMREYNDPEYKLDYFMEDVELNAYYYY 236


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 295 NTVTHVVENPNGTATFKREYGDTELKVTISADKWDGVAYRYY 420
           N  T++V N N ++   REY D E K+    +  +  AY YY
Sbjct: 196 NIETYIV-NTNYSSKNMREYNDPEYKLDYFMEDVELNAYYYY 236


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 324 GILYNMSYGVSINCVRGFYRQYTIDGFVERHTGLKNCLL 208
           G L  +  GV I+C     R   +   ++R T  K CLL
Sbjct: 314 GDLEGLVEGVIIDCSNHIGRGKLVTALIQRGTLKKGCLL 352


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 210 LCTVAVDGDGLVFVAFLDQCSCRLELQKFP 121
           L  ++ DGD L  +    +  C +EL+ FP
Sbjct: 141 LLRISQDGDILYSMRLTIKAKCPMELRNFP 170


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 96  KLKEPIEVFFSIECVFFTQERHG 28
           K KEP+ VF++ E        HG
Sbjct: 81  KFKEPVAVFYASEIAIGLFFLHG 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,579
Number of Sequences: 438
Number of extensions: 3275
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)