Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n17f
(487 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.18
At1g55940.1 68414.m06416 cytochrome P450, putative similar to SP... 32 0.24
At5g24070.1 68418.m02827 peroxidase family protein similar to ca... 29 1.3
At5g63540.1 68418.m07975 expressed protein ; expression support... 29 2.2
At5g54710.1 68418.m06813 ankyrin repeat family protein contains ... 29 2.2
At5g14730.1 68418.m01728 expressed protein 29 2.2
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 29 2.2
At3g05330.1 68416.m00581 cyclin family low similarity to microtu... 27 5.1
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 27 6.7
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi... 27 6.7
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 27 6.7
At2g22720.3 68415.m02692 expressed protein 27 6.7
At2g22720.2 68415.m02691 expressed protein 27 6.7
At2g22720.1 68415.m02693 expressed protein 27 6.7
At1g32030.1 68414.m03940 expressed protein contains Pfam profile... 27 6.7
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 27 8.9
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.3 bits (70), Expect = 0.18
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +1
Query: 187 TVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDG-----NTVTH-VVENPNGTATFKR 348
T D++ + T+F +PFD T + +K +TV G + V H V + P GTA K
Sbjct: 553 TQDNDDFERTLFIRNLPFDVTKE---EVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKF 609
Query: 349 EYGDTELKVTISADKWDGV 405
+ D + +AD GV
Sbjct: 610 KTADASVAAISAADTASGV 628
>At1g55940.1 68414.m06416 cytochrome P450, putative similar to
SP:Q42569 from [Arabidopsis thaliana]
Length = 639
Score = 31.9 bits (69), Expect = 0.24
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 259 VLTIKTTYTVDGNTVTHVVENPNGTATFKREYGDTELKVTISADKWDGVAYRYYKV*INS 438
+ + +TT T+ TV + ENP KRE+ E + ADK GV ++ Y+ +N
Sbjct: 435 IASYETTSTMTALTVKFIAENPKVLMELKREH---ETILQNRADKESGVTWKEYRSMMNF 491
Query: 439 IYL 447
++
Sbjct: 492 THM 494
>At5g24070.1 68418.m02827 peroxidase family protein similar to
cationic peroxidase, Peanut [Arachis hypogaea]
GP|166475|gb|AAA32676; contains Pfam profile PF00141:
Peroxidase
Length = 340
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -3
Query: 215 VSFVPLLSTVMVLYLSPSLINVVVGLNCKSFRIWSSGRPTNLRNPSKFSSLSNVYFLPKK 36
V+F PLL+ V++ + + GLN +W + TN + ++ V K
Sbjct: 4 VNFFPLLALVVISLAGKATVEAATGLNPPVKLVWHYYKLTNTCDDAETYIRYQVEKFYKN 63
Query: 35 DMVALPKLKR 6
D PKL R
Sbjct: 64 DSSIAPKLLR 73
>At5g63540.1 68418.m07975 expressed protein ; expression supported
by MPSS
Length = 602
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 264 DDKNHVHS*WKHRNSCCRESQWHSNIQKGIR*HRTKSYYLGR*M 395
D NHVH H NS + H+ +GI H T+++ R M
Sbjct: 266 DTGNHVHDTGNHVNSSASGNASHTQANQGIPVHVTRTHNSSRAM 309
>At5g54710.1 68418.m06813 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 598
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = +1
Query: 181 TITVDSNGTKETVFESGVPFDETIDGVLTIKTT------YTVDG--NTVTHVVENPNGTA 336
+ + + GT ETVF + +T + ++ Y++D NTV HV + + T+
Sbjct: 259 SFNITTQGTIETVFHLAAKYQKTKAFIFMAQSANIRQLLYSLDAEDNTVLHVAASVDSTS 318
Query: 337 TFKREYGDTELKVTISADK 393
+ +T + VT+ K
Sbjct: 319 LVRHILSETTIDVTLKNKK 337
>At5g14730.1 68418.m01728 expressed protein
Length = 246
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 154 LIKEGDKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTY 282
+I+E + Y ++ VD KE FE+ DE++ T+ TT+
Sbjct: 32 VIRESESYYSVKVDGENDKEFEFETLPLGDESLFHFSTMTTTF 74
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 103 LPEDQIRKLLQFKPTTT--LIKEGDKYKT-ITVDSNGTKETV 219
L E++IRK+ ++P TT + K D ++T + SN KETV
Sbjct: 111 LTEEEIRKIYSYRPETTQDISKIQDAHQTEESPPSNSVKETV 152
>At3g05330.1 68416.m00581 cyclin family low similarity to
microtubule-binding protein TANGLED1 [Zea mays]
GI:11228986; contains Pfam profile PF00134: Cyclin,
N-terminal domain
Length = 444
Score = 27.5 bits (58), Expect = 5.1
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +2
Query: 47 KNTHSIEKKTSMG----SLSLSVSPKTRSGNFCSSSLQLH*S-RKATNTRPSPSTATVQR 211
+N ++ +K+S+ +L +SP TR+GNFC S + S + N STA R
Sbjct: 365 RNGSNLARKSSISPKRVTLQAFLSP-TRNGNFCKKSPKASISPTRVCNKSQKLSTAAKFR 423
Query: 212 RQFLSPVCLSTK 247
R F SP L+ +
Sbjct: 424 RSF-SPSRLAMR 434
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 27.1 bits (57), Expect = 6.7
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Frame = +1
Query: 91 KFVGLPEDQIRKLLQFKPTTT-----LIKEGDKYKTITVDSNGTKETVFESGVPFDETID 255
+++G+ D+ RKL Q+ T LI E + + + G + + F++
Sbjct: 95 RYLGVLADKSRKLDQYALETEARISPLINEKKRLFNDLLTTKGNVKVFCRARPLFEDEGP 154
Query: 256 GVLTIKTTYTVDGNTVTHVVENPNGTATFKREYGDTELKVTISAD 390
++ T+ NT + NP F R YG + ++ +D
Sbjct: 155 SIIEFPDNCTIRVNTSDDTLSNPKKEFEFDRVYGPQVGQASLFSD 199
>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA binding protein PufA
[Dictyostelium discoideum] gi|5106561|gb|AAD39751
Length = 524
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 255 IDGFVERHTGLKNCLLCTVAVDGDGLVFVAFLDQCSCRLELQKFPD 118
+DG + ++ L VD G V++ DQ CRL LQKF D
Sbjct: 220 LDGSAKCMKNKEDSLDLASMVDSYGSVYLMAKDQLGCRL-LQKFVD 264
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 119 SGNFCSSSLQLH*SRKATNTRPSPSTATVQRRQFLSPVCLSTKP 250
SG+ S ++L+ + +NT P P+TA+ R+ L+ + S+ P
Sbjct: 101 SGDEISLDVELNMAELQSNTPPRPATASNTPRRGLTTISESSSP 144
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 134 SSSLQLH*SRKATNTRPSPSTATVQRRQFLS 226
SSS + R ATN RP PS ++++R+ +S
Sbjct: 382 SSSNGVGPGRSATNARPLPSKSSLERKPSIS 412
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 134 SSSLQLH*SRKATNTRPSPSTATVQRRQFLS 226
SSS + R ATN RP PS ++++R+ +S
Sbjct: 485 SSSNGVGPGRSATNARPLPSKSSLERKPSIS 515
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 134 SSSLQLH*SRKATNTRPSPSTATVQRRQFLS 226
SSS + R ATN RP PS ++++R+ +S
Sbjct: 153 SSSNGVGPGRSATNARPLPSKSSLERKPSIS 183
>At1g32030.1 68414.m03940 expressed protein contains Pfam profile
PF03754: Domain of unknown function (DUF313); expression
supported by MPSS
Length = 333
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 274 TTYTVDGNTVTHVVENPNGTATFKREYGDTELKVTISADKWDG 402
+T + NT NPN + KR++ D+E K + W G
Sbjct: 141 STLLAEYNTEMANPPNPNSETSLKRKHSDSEPKKAKTPYSWKG 183
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 26.6 bits (56), Expect = 8.9
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 294 SINCVRGFYRQYTIDGFVERHTGLKNCLLCTVAVDGDGLVFVAFLDQCSCRLELQKFPDL 115
S+NCV G + I+ + +TG+ L + G V L QC C L+ Q P L
Sbjct: 375 SVNCVDGKGCEEGIEDILVLYTGITEKLSLESELQGKFKSMVEILRQCCC-LDPQARPVL 433
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,975,884
Number of Sequences: 28952
Number of extensions: 236849
Number of successful extensions: 819
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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